Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OFU58_RS02180 Genome accession   NZ_CP107289
Coordinates   459322..459951 (-) Length   209 a.a.
NCBI ID   WP_017400445.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454322..464951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS02145 (OFU58_02145) mlaE 454655..455431 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OFU58_RS02150 (OFU58_02150) - 455431..456111 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OFU58_RS02155 (OFU58_02155) - 456138..456779 (+) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  OFU58_RS02160 (OFU58_02160) - 456791..457078 (+) 288 WP_005078357.1 STAS domain-containing protein -
  OFU58_RS02165 (OFU58_02165) - 457151..458164 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  OFU58_RS02170 (OFU58_02170) - 458323..458904 (+) 582 WP_032036713.1 TIGR00730 family Rossman fold protein -
  OFU58_RS02175 (OFU58_02175) mutT 458919..459320 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  OFU58_RS02180 (OFU58_02180) comF 459322..459951 (-) 630 WP_017400445.1 phosphoribosyltransferase family protein Machinery gene
  OFU58_RS02185 (OFU58_02185) recG 459944..461989 (-) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  OFU58_RS02190 (OFU58_02190) - 462010..462825 (+) 816 WP_280587068.1 NAD-dependent epimerase/dehydratase family protein -
  OFU58_RS02195 (OFU58_02195) - 462905..463888 (+) 984 WP_081313905.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24486.71 Da        Isoelectric Point: 9.9656

>NTDB_id=739332 OFU58_RS02180 WP_017400445.1 459322..459951(-) (comF) [Acinetobacter pittii strain BM4623]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCISIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=739332 OFU58_RS02180 WP_017400445.1 459322..459951(-) (comF) [Acinetobacter pittii strain BM4623]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGTTTAAATGAGCACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCATATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823