Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OFO16_RS12190 Genome accession   NZ_CP107282
Coordinates   2667850..2668464 (+) Length   204 a.a.
NCBI ID   WP_176291544.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2662850..2673464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS12175 (OFO16_12175) - 2664534..2665901 (-) 1368 WP_263837425.1 NADH-quinone oxidoreductase subunit L -
  OFO16_RS12180 (OFO16_12180) - 2666001..2666876 (+) 876 WP_263837426.1 LysR family transcriptional regulator -
  OFO16_RS12185 (OFO16_12185) hpt 2667002..2667532 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  OFO16_RS12190 (OFO16_12190) opaR 2667850..2668464 (+) 615 WP_176291544.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OFO16_RS12195 (OFO16_12195) lpdA 2668589..2670016 (-) 1428 WP_263837427.1 dihydrolipoyl dehydrogenase -
  OFO16_RS12200 (OFO16_12200) aceF 2670283..2672169 (-) 1887 WP_263837428.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23684.01 Da        Isoelectric Point: 6.3787

>NTDB_id=739269 OFO16_RS12190 WP_176291544.1 2667850..2668464(+) (opaR) [Vibrio natriegens strain PWH3a]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNKHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRDQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=739269 OFO16_RS12190 WP_176291544.1 2667850..2668464(+) (opaR) [Vibrio natriegens strain PWH3a]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGCATTGGCCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAACATCGATTTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGCTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATTTGCAACAAGCATCAACCAGAG
CATCTGACTAACCTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGACGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCGATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

91.176

100

0.912
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701