Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   FOY54_RS01400 Genome accession   NZ_AP019774
Coordinates   268664..268927 (+) Length   87 a.a.
NCBI ID   WP_034375715.1    Uniprot ID   -
Organism   Helicobacter suis strain SNTW101c     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263664..273927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS01375 (SNTW_02830) - 263874..265274 (-) 1401 WP_006564105.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  FOY54_RS01380 (SNTW_02840) - 265413..266588 (+) 1176 WP_064430215.1 DNA-methyltransferase -
  FOY54_RS01385 (SNTW_02850) - 266575..267441 (+) 867 WP_064430216.1 CfrBI family restriction endonuclease -
  FOY54_RS01390 (SNTW_02860) - 267611..268381 (+) 771 WP_064430217.1 hypothetical protein -
  FOY54_RS01395 (SNTW_02870) comB2 268378..268653 (+) 276 WP_034375713.1 TrbC/VirB2 family protein Machinery gene
  FOY54_RS01400 (SNTW_02880) comB3 268664..268927 (+) 264 WP_034375715.1 hypothetical protein Machinery gene
  FOY54_RS01405 (SNTW_02890) - 268947..269267 (+) 321 WP_034375717.1 hypothetical protein -
  FOY54_RS01410 (SNTW_02900) comB4 269280..271715 (+) 2436 WP_064430218.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  FOY54_RS09500 (SNTW_02910) - 271720..271929 (+) 210 WP_141556969.1 hypothetical protein -
  FOY54_RS01420 (SNTW_02920) - 271939..273030 (+) 1092 WP_050780156.1 type IV secretion system protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9910.98 Da        Isoelectric Point: 8.9498

>NTDB_id=73919 FOY54_RS01400 WP_034375715.1 268664..268927(+) (comB3) [Helicobacter suis strain SNTW101c]
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=73919 FOY54_RS01400 WP_034375715.1 268664..268927(+) (comB3) [Helicobacter suis strain SNTW101c]
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

63.218

100

0.632

Multiple sequence alignment