Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   FOY54_RS01395 Genome accession   NZ_AP019774
Coordinates   268378..268653 (+) Length   91 a.a.
NCBI ID   WP_034375713.1    Uniprot ID   -
Organism   Helicobacter suis strain SNTW101c     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263378..273653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY54_RS01375 (SNTW_02830) - 263874..265274 (-) 1401 WP_006564105.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  FOY54_RS01380 (SNTW_02840) - 265413..266588 (+) 1176 WP_064430215.1 DNA-methyltransferase -
  FOY54_RS01385 (SNTW_02850) - 266575..267441 (+) 867 WP_064430216.1 CfrBI family restriction endonuclease -
  FOY54_RS01390 (SNTW_02860) - 267611..268381 (+) 771 WP_064430217.1 hypothetical protein -
  FOY54_RS01395 (SNTW_02870) comB2 268378..268653 (+) 276 WP_034375713.1 TrbC/VirB2 family protein Machinery gene
  FOY54_RS01400 (SNTW_02880) comB3 268664..268927 (+) 264 WP_034375715.1 hypothetical protein Machinery gene
  FOY54_RS01405 (SNTW_02890) - 268947..269267 (+) 321 WP_034375717.1 hypothetical protein -
  FOY54_RS01410 (SNTW_02900) comB4 269280..271715 (+) 2436 WP_064430218.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  FOY54_RS09500 (SNTW_02910) - 271720..271929 (+) 210 WP_141556969.1 hypothetical protein -
  FOY54_RS01420 (SNTW_02920) - 271939..273030 (+) 1092 WP_050780156.1 type IV secretion system protein -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10141.33 Da        Isoelectric Point: 10.5741

>NTDB_id=73918 FOY54_RS01395 WP_034375713.1 268378..268653(+) (comB2) [Helicobacter suis strain SNTW101c]
MRKYLKAFVLLCMGVLQAGGLENLQNAIQSWLSSGSAKLILTIIFIGIGIFVWKNLDRWKEILLTVLGVVLGSLVFFGAP
KLSAWLMQIFQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=73918 FOY54_RS01395 WP_034375713.1 268378..268653(+) (comB2) [Helicobacter suis strain SNTW101c]
GTGAGGAAATATCTAAAAGCATTTGTCTTACTTTGTATGGGAGTATTGCAAGCTGGGGGTTTGGAGAATCTGCAAAATGC
CATCCAATCTTGGCTGAGTAGTGGCAGTGCCAAACTAATTTTAACCATCATCTTCATAGGCATTGGTATCTTTGTGTGGA
AAAACTTGGATCGGTGGAAAGAGATTTTGTTGACAGTTCTAGGCGTGGTGTTAGGCTCTTTAGTCTTTTTTGGTGCGCCT
AAGCTATCTGCTTGGTTGATGCAAATTTTTCAATAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(19-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.5

87.912

0.505

Multiple sequence alignment