Detailed information NTG0739163

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PALA22_RS07950
• Genome accession: NZ_CP107275
• Coordinates: 1720308..1721180 (-)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1715308..1726180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA22_RS07905 (PALA22_01571)	-	1716169..1716339 (-)	171	WP_003094672.1	DUF3094 family protein	-
PALA22_RS07910 (PALA22_01572)	-	1716365..1716814 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
PALA22_RS07915 (PALA22_01573)	-	1716811..1717440 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA22_RS07920 (PALA22_01574)	-	1717573..1717998 (+)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
PALA22_RS07925 (PALA22_01575)	-	1717995..1718465 (+)	471	WP_003094664.1	hypothetical protein	-
PALA22_RS07930 (PALA22_01576)	-	1718462..1719151 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PALA22_RS07935 (PALA22_01577)	-	1719257..1719466 (+)	210	WP_003094660.1	hypothetical protein	-
PALA22_RS07940 (PALA22_01578)	yacG	1719503..1719703 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA22_RS07945 (PALA22_01579)	coaE	1719700..1720311 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
PALA22_RS07950 (PALA22_01580)	pilD	1720308..1721180 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA22_RS07955 (PALA22_01581)	pilC	1721181..1722398 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PALA22_RS07960 (PALA22_01582)	pilB	1722402..1724102 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA22_RS07965 (PALA22_01583)	-	1724333..1724797 (+)	465	WP_003107295.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=739163 PALA22_RS07950 WP_003107301.1 1720308..1721180(-) (pilD) [Pseudomonas aeruginosa strain PALA22]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=739163 PALA22_RS07950 WP_003107301.1 1720308..1721180(-) (pilD) [Pseudomonas aeruginosa strain PALA22]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469