Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OHM01_RS08725 Genome accession   NZ_CP107274
Coordinates   1659575..1659970 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654575..1664970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS08685 (OHM01_08685) - 1654877..1655122 (-) 246 WP_003689849.1 hypothetical protein -
  OHM01_RS08690 (OHM01_08690) - 1655234..1655662 (+) 429 WP_020997399.1 CopD family protein -
  OHM01_RS08695 (OHM01_08695) - 1655674..1656150 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  OHM01_RS08700 (OHM01_08700) - 1656180..1656668 (-) 489 WP_025455834.1 dihydrofolate reductase -
  OHM01_RS08705 (OHM01_08705) aroG 1656736..1657791 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  OHM01_RS08710 (OHM01_08710) - 1657936..1658181 (-) 246 WP_154235562.1 hypothetical protein -
  OHM01_RS08715 (OHM01_08715) - 1658409..1658705 (+) 297 WP_003689859.1 hypothetical protein -
  OHM01_RS08720 (OHM01_08720) - 1658702..1658941 (+) 240 WP_263936386.1 hypothetical protein -
  OHM01_RS08725 (OHM01_08725) comE 1659575..1659970 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OHM01_RS08730 (OHM01_08730) - 1660075..1660191 (-) 117 Protein_1684 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=739138 OHM01_RS08725 WP_003703428.1 1659575..1659970(-) (comE) [Neisseria gonorrhoeae strain 1145734]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=739138 OHM01_RS08725 WP_003703428.1 1659575..1659970(-) (comE) [Neisseria gonorrhoeae strain 1145734]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1