Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OHM05_RS10295 Genome accession   NZ_CP107272
Coordinates   1958596..1958991 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953596..1963991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS10290 (OHM05_10290) - 1958375..1958491 (+) 117 Protein_1981 competence protein ComE -
  OHM05_RS10295 (OHM05_10295) comE 1958596..1958991 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OHM05_RS10300 (OHM05_10300) - 1959516..1959845 (-) 330 Protein_1983 transposase -
  OHM05_RS10305 (OHM05_10305) dnaJ 1959979..1961100 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  OHM05_RS10310 (OHM05_10310) - 1961295..1963314 (+) 2020 Protein_1985 OPT family oligopeptide transporter -
  OHM05_RS10315 (OHM05_10315) rfbC 1963358..1963915 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=739100 OHM05_RS10295 WP_003703428.1 1958596..1958991(+) (comE) [Neisseria gonorrhoeae strain 1130991]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=739100 OHM05_RS10295 WP_003703428.1 1958596..1958991(+) (comE) [Neisseria gonorrhoeae strain 1130991]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1