Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OHM05_RS07805 Genome accession   NZ_CP107272
Coordinates   1485693..1486496 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain 1130991     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1480693..1491496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS07775 (OHM05_07775) holA 1480706..1481704 (-) 999 WP_003690761.1 DNA polymerase III subunit delta -
  OHM05_RS07780 (OHM05_07780) lptE 1481706..1482185 (-) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  OHM05_RS07785 (OHM05_07785) pgeF 1482237..1483016 (-) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  OHM05_RS07790 (OHM05_07790) - 1483169..1483393 (+) 225 WP_225577482.1 hypothetical protein -
  OHM05_RS07795 (OHM05_07795) - 1483470..1484417 (+) 948 Protein_1501 bile acid:sodium symporter family protein -
  OHM05_RS07800 (OHM05_07800) rluD 1484570..1485694 (-) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OHM05_RS07805 (OHM05_07805) comL 1485693..1486496 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  OHM05_RS07810 (OHM05_07810) comA 1486566..1488785 (-) 2220 WP_020997305.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OHM05_RS07815 (OHM05_07815) - 1488817..1489092 (+) 276 WP_153707850.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=739084 OHM05_RS07805 WP_003687645.1 1485693..1486496(+) (comL) [Neisseria gonorrhoeae strain 1130991]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=739084 OHM05_RS07805 WP_003687645.1 1485693..1486496(+) (comL) [Neisseria gonorrhoeae strain 1130991]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963