Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OHM03_RS11110 Genome accession   NZ_CP107271
Coordinates   2103325..2103741 (-) Length   138 a.a.
NCBI ID   WP_263955078.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1123850     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098325..2108741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS11095 (OHM03_11095) msrAB 2098767..2100335 (-) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  OHM03_RS11100 (OHM03_11100) pilA 2100481..2101734 (+) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene
  OHM03_RS11105 (OHM03_11105) - 2102003..2102779 (-) 777 WP_263955129.1 opacity family porin -
  OHM03_RS11110 (OHM03_11110) pilE 2103325..2103741 (-) 417 WP_263955078.1 pilin Machinery gene
  OHM03_RS11115 (OHM03_11115) lpxC 2103847..2104770 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OHM03_RS11125 (OHM03_11125) - 2105484..2105882 (-) 399 Protein_2133 pilin -
  OHM03_RS11130 (OHM03_11130) - 2106409..2106777 (-) 369 Protein_2134 pilin -
  OHM03_RS11135 (OHM03_11135) - 2107565..2107690 (+) 126 Protein_2135 IS110 family transposase -
  OHM03_RS11140 (OHM03_11140) - 2107949..2108302 (-) 354 Protein_2136 pilin -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15074.89 Da        Isoelectric Point: 9.4158

>NTDB_id=739052 OHM03_RS11110 WP_263955078.1 2103325..2103741(-) (pilE) [Neisseria gonorrhoeae strain 1123850]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNGDAGVASASTIKGKYVQKVEVTKGVVTATMNSTGVNKEIK
GKKLSLWAKRQDGSVKWFCGQPVKRDNKANDTVADAADKDKIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=739052 OHM03_RS11110 WP_263955078.1 2103325..2103741(-) (pilE) [Neisseria gonorrhoeae strain 1123850]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCCGCTTCAACAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCACAAAAGGCGTCGTTACCGCCACAATGAATTCAACCGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAA
CAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATA
AACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.82

100

0.754
  pilE Neisseria gonorrhoeae MS11

72.662

100

0.732