Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QCG48_RS04270 Genome accession   NZ_CP122316
Coordinates   886717..887373 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain HT-946     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 881717..892373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCG48_RS04240 (QCG48_04240) dcyD 882596..883582 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  QCG48_RS04245 (QCG48_04245) tcyL 883597..884265 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QCG48_RS04250 (QCG48_04250) tcyN 884262..885014 (+) 753 WP_001272991.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QCG48_RS04255 (QCG48_04255) sdiA 885244..885966 (+) 723 WP_001152715.1 transcriptional regulator SdiA -
  QCG48_RS04260 (QCG48_04260) yecF 886034..886258 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QCG48_RS04265 (QCG48_04265) yecU 886245..886421 (-) 177 WP_000590347.1 protein YecU -
  QCG48_RS22525 - 886504..886575 (-) 72 Protein_828 transcriptional regulator -
  QCG48_RS04270 (QCG48_04270) letA 886717..887373 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QCG48_RS04275 (QCG48_04275) uvrC 887370..889202 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QCG48_RS04280 (QCG48_04280) pgsA 889259..889807 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QCG48_RS04300 (QCG48_04300) yecA 890457..891122 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=739028 QCG48_RS04270 WP_000611335.1 886717..887373(+) (letA) [Escherichia coli strain HT-946]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=739028 QCG48_RS04270 WP_000611335.1 886717..887373(+) (letA) [Escherichia coli strain HT-946]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486