Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OHM03_RS02355 Genome accession   NZ_CP107271
Coordinates   447475..448083 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain 1123850     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442475..453083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS02330 (OHM03_02330) - 442801..443381 (-) 581 Protein_451 superoxide dismutase -
  OHM03_RS02335 (OHM03_02335) dnaB 443545..444951 (+) 1407 WP_263955094.1 replicative DNA helicase -
  OHM03_RS02340 (OHM03_02340) pilH 445259..445924 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM03_RS02345 (OHM03_02345) pilI 445956..446564 (+) 609 WP_263955095.1 type IV pilus modification protein PilV Machinery gene
  OHM03_RS02350 (OHM03_02350) pilJ 446561..447496 (+) 936 WP_263955096.1 PilW family protein Machinery gene
  OHM03_RS02355 (OHM03_02355) pilK 447475..448083 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM03_RS02360 (OHM03_02360) pilL 448085..448558 (+) 474 WP_263955112.1 PilX family type IV pilin Machinery gene
  OHM03_RS02365 (OHM03_02365) - 448628..448936 (-) 309 WP_010359926.1 AzlD family protein -
  OHM03_RS02370 (OHM03_02370) - 448933..449644 (-) 712 Protein_459 AzlC family ABC transporter permease -
  OHM03_RS02375 (OHM03_02375) dut 449810..450262 (+) 453 WP_003702446.1 dUTP diphosphatase -
  OHM03_RS02380 (OHM03_02380) dapC 450340..451527 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -
  OHM03_RS02385 (OHM03_02385) yaaA 451838..452617 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=739022 OHM03_RS02355 WP_003690900.1 447475..448083(+) (pilK) [Neisseria gonorrhoeae strain 1123850]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=739022 OHM03_RS02355 WP_003690900.1 447475..448083(+) (pilK) [Neisseria gonorrhoeae strain 1123850]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896