Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   OHM03_RS02350 Genome accession   NZ_CP107271
Coordinates   446561..447496 (+) Length   311 a.a.
NCBI ID   WP_263955096.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1123850     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441561..452496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS02325 (OHM03_02325) - 442062..442571 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OHM03_RS02330 (OHM03_02330) - 442801..443381 (-) 581 Protein_451 superoxide dismutase -
  OHM03_RS02335 (OHM03_02335) dnaB 443545..444951 (+) 1407 WP_263955094.1 replicative DNA helicase -
  OHM03_RS02340 (OHM03_02340) pilH 445259..445924 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM03_RS02345 (OHM03_02345) pilI 445956..446564 (+) 609 WP_263955095.1 type IV pilus modification protein PilV Machinery gene
  OHM03_RS02350 (OHM03_02350) pilJ 446561..447496 (+) 936 WP_263955096.1 PilW family protein Machinery gene
  OHM03_RS02355 (OHM03_02355) pilK 447475..448083 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM03_RS02360 (OHM03_02360) pilL 448085..448558 (+) 474 WP_263955112.1 PilX family type IV pilin Machinery gene
  OHM03_RS02365 (OHM03_02365) - 448628..448936 (-) 309 WP_010359926.1 AzlD family protein -
  OHM03_RS02370 (OHM03_02370) - 448933..449644 (-) 712 Protein_459 AzlC family ABC transporter permease -
  OHM03_RS02375 (OHM03_02375) dut 449810..450262 (+) 453 WP_003702446.1 dUTP diphosphatase -
  OHM03_RS02380 (OHM03_02380) dapC 450340..451527 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34274.95 Da        Isoelectric Point: 8.7124

>NTDB_id=739021 OHM03_RS02350 WP_263955096.1 446561..447496(+) (pilJ) [Neisseria gonorrhoeae strain 1123850]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAISK
PGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFDNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRYIY
VSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=739021 OHM03_RS02350 WP_263955096.1 446561..447496(+) (pilJ) [Neisseria gonorrhoeae strain 1123850]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATATCGAAA
CCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGACAATAATGAGGAAGGTTTGTTCCGCTTCC
AATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTATATCTAT
GTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTCTGTTAC
GCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTTATGCTT
ACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

89.49

100

0.904