Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OHL99_RS10345 Genome accession   NZ_CP107270
Coordinates   1958426..1958821 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1081168     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953426..1963821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS10340 (OHL99_10340) - 1958205..1958321 (+) 117 Protein_1991 competence protein ComE -
  OHL99_RS10345 (OHL99_10345) comE 1958426..1958821 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OHL99_RS10350 (OHL99_10350) - 1959346..1959675 (-) 330 Protein_1993 transposase -
  OHL99_RS10355 (OHL99_10355) dnaJ 1959809..1960930 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  OHL99_RS10360 (OHL99_10360) - 1961125..1963143 (+) 2019 WP_263932726.1 OPT family oligopeptide transporter -
  OHL99_RS10365 (OHL99_10365) rfbC 1963187..1963744 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=739003 OHL99_RS10345 WP_003703428.1 1958426..1958821(+) (comE) [Neisseria gonorrhoeae strain 1081168]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=739003 OHL99_RS10345 WP_003703428.1 1958426..1958821(+) (comE) [Neisseria gonorrhoeae strain 1081168]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1