Detailed information
Bioinformatically predicted
Overview
| Name | pilK | Type | Machinery gene |
| Locus tag | OHL99_RS02915 | Genome accession | NZ_CP107270 |
| Coordinates | 565045..565653 (+) | Length | 202 a.a. |
| NCBI ID | WP_047921847.1 | Uniprot ID | A0AA44ZGE4 |
| Organism | Neisseria gonorrhoeae strain 1081168 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 566198..604461 | 565045..565653 | flank | 545 |
Gene organization within MGE regions
Location: 565045..604461
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHL99_RS02915 (OHL99_02915) | pilK | 565045..565653 (+) | 609 | WP_047921847.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| OHL99_RS02920 (OHL99_02920) | pilL | 565655..566128 (+) | 474 | WP_012503482.1 | PilX family type IV pilin | Machinery gene |
| OHL99_RS02925 (OHL99_02925) | - | 566198..566506 (-) | 309 | WP_003706588.1 | AzlD family protein | - |
| OHL99_RS02930 (OHL99_02930) | - | 566503..567214 (-) | 712 | Protein_565 | AzlC family ABC transporter permease | - |
| OHL99_RS02935 (OHL99_02935) | dut | 567380..567832 (+) | 453 | WP_003701071.1 | dUTP diphosphatase | - |
| OHL99_RS02940 (OHL99_02940) | dapC | 567904..569091 (+) | 1188 | WP_003701073.1 | succinyldiaminopimelate transaminase | - |
| OHL99_RS02945 (OHL99_02945) | yaaA | 569247..570026 (+) | 780 | WP_003687925.1 | peroxide stress protein YaaA | - |
| OHL99_RS02960 (OHL99_02960) | - | 570556..571756 (+) | 1201 | Protein_569 | tyrosine-type recombinase/integrase | - |
| OHL99_RS02965 (OHL99_02965) | - | 572112..572381 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| OHL99_RS02970 (OHL99_02970) | - | 572576..573259 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| OHL99_RS11835 | - | 573540..573806 (-) | 267 | Protein_572 | hypothetical protein | - |
| OHL99_RS02980 (OHL99_02980) | - | 573917..574132 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| OHL99_RS02985 (OHL99_02985) | - | 574184..574675 (-) | 492 | WP_010359966.1 | siphovirus Gp157 family protein | - |
| OHL99_RS02990 (OHL99_02990) | - | 574672..574854 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| OHL99_RS02995 (OHL99_02995) | - | 574994..575680 (-) | 687 | WP_010359969.1 | phage replication initiation protein, NGO0469 family | - |
| OHL99_RS03000 (OHL99_03000) | - | 575749..575910 (-) | 162 | WP_003693867.1 | hypothetical protein | - |
| OHL99_RS03005 (OHL99_03005) | - | 575907..576182 (-) | 276 | WP_003703838.1 | NGO1622 family putative holin | - |
| OHL99_RS03010 (OHL99_03010) | - | 576335..576667 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| OHL99_RS03015 (OHL99_03015) | - | 576808..577095 (-) | 288 | WP_050171272.1 | hypothetical protein | - |
| OHL99_RS03020 (OHL99_03020) | - | 577092..577568 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| OHL99_RS03025 (OHL99_03025) | - | 577601..577801 (-) | 201 | WP_003704298.1 | hypothetical protein | - |
| OHL99_RS03030 (OHL99_03030) | - | 578285..578503 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| OHL99_RS03035 (OHL99_03035) | - | 578520..578879 (-) | 360 | WP_047918230.1 | hypothetical protein | - |
| OHL99_RS03040 (OHL99_03040) | - | 578880..579419 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| OHL99_RS03045 (OHL99_03045) | - | 579579..580295 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| OHL99_RS03050 (OHL99_03050) | - | 580676..580903 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| OHL99_RS03055 (OHL99_03055) | - | 581021..582085 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| OHL99_RS03060 (OHL99_03060) | - | 582082..583443 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| OHL99_RS03065 (OHL99_03065) | - | 583460..583690 (+) | 231 | WP_050154378.1 | hypothetical protein | - |
| OHL99_RS03070 (OHL99_03070) | - | 583782..584276 (+) | 495 | WP_041421248.1 | DUF3310 domain-containing protein | - |
| OHL99_RS03075 (OHL99_03075) | - | 584453..584602 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| OHL99_RS03080 (OHL99_03080) | - | 584631..584912 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| OHL99_RS03085 (OHL99_03085) | - | 584903..585340 (+) | 438 | WP_017147288.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OHL99_RS03090 (OHL99_03090) | - | 585333..585638 (+) | 306 | WP_003687981.1 | nuclease domain-containing protein | - |
| OHL99_RS03095 (OHL99_03095) | - | 585635..586018 (+) | 384 | WP_003690918.1 | recombination protein NinB | - |
| OHL99_RS03100 (OHL99_03100) | - | 586009..586527 (+) | 519 | WP_003687984.1 | HNH endonuclease | - |
| OHL99_RS03105 (OHL99_03105) | - | 586592..587014 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| OHL99_RS03110 (OHL99_03110) | - | 587014..587553 (+) | 540 | WP_003690920.1 | hypothetical protein | - |
| OHL99_RS03115 (OHL99_03115) | - | 587534..588808 (+) | 1275 | WP_003701186.1 | PBSX family phage terminase large subunit | - |
| OHL99_RS03120 (OHL99_03120) | - | 588793..591060 (+) | 2268 | WP_229689248.1 | hypothetical protein | - |
| OHL99_RS03125 (OHL99_03125) | - | 591297..592493 (+) | 1197 | WP_003687992.1 | hypothetical protein | - |
| OHL99_RS03130 (OHL99_03130) | - | 592490..593704 (+) | 1215 | WP_044270986.1 | hypothetical protein | - |
| OHL99_RS11985 | - | 593907..599816 (+) | 5910 | WP_033909227.1 | PLxRFG domain-containing protein | - |
| OHL99_RS03145 (OHL99_03145) | - | 600442..601737 (+) | 1296 | WP_003690933.1 | DUF4043 family protein | - |
| OHL99_RS03150 (OHL99_03150) | - | 601792..602265 (+) | 474 | WP_003690936.1 | hypothetical protein | - |
| OHL99_RS03155 (OHL99_03155) | - | 602271..602756 (+) | 486 | WP_003687997.1 | hypothetical protein | - |
| OHL99_RS03160 (OHL99_03160) | - | 602753..603427 (+) | 675 | WP_003687998.1 | hypothetical protein | - |
| OHL99_RS03165 (OHL99_03165) | - | 603430..603579 (+) | 150 | WP_003706419.1 | hypothetical protein | - |
| OHL99_RS03170 (OHL99_03170) | - | 603616..604461 (-) | 846 | WP_047921371.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 202 a.a. Molecular weight: 22039.97 Da Isoelectric Point: 7.5810
>NTDB_id=738977 OHL99_RS02915 WP_047921847.1 565045..565653(+) (pilK) [Neisseria gonorrhoeae strain 1081168]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEEAFDNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEEAFDNIVVKGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
Nucleotide
Download Length: 609 bp
>NTDB_id=738977 OHL99_RS02915 WP_047921847.1 565045..565653(+) (pilK) [Neisseria gonorrhoeae strain 1081168]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGGCTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGGCTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilK | Neisseria gonorrhoeae MS11 |
92.611 |
100 |
0.931 |