Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OHL99_RS02900 Genome accession   NZ_CP107270
Coordinates   562799..563461 (+) Length   220 a.a.
NCBI ID   WP_047916986.1    Uniprot ID   A0AA44U7R7
Organism   Neisseria gonorrhoeae strain 1081168     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557799..568461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS02875 (OHL99_02875) cysT 557976..558805 (-) 830 Protein_553 sulfate ABC transporter permease subunit CysT -
  OHL99_RS02880 (OHL99_02880) - 558991..559323 (+) 333 WP_003687908.1 hypothetical protein -
  OHL99_RS02885 (OHL99_02885) - 559653..560162 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OHL99_RS02890 (OHL99_02890) - 560394..560975 (-) 582 WP_003690895.1 superoxide dismutase -
  OHL99_RS02895 (OHL99_02895) dnaB 561139..562542 (+) 1404 WP_012503477.1 replicative DNA helicase -
  OHL99_RS11980 - 562536..562648 (-) 113 Protein_558 IS5/IS1182 family transposase -
  OHL99_RS02900 (OHL99_02900) pilH 562799..563461 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHL99_RS02905 (OHL99_02905) pilI 563493..564107 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  OHL99_RS02910 (OHL99_02910) pilJ 564104..565066 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  OHL99_RS02915 (OHL99_02915) pilK 565045..565653 (+) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHL99_RS02920 (OHL99_02920) pilL 565655..566128 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  OHL99_RS02925 (OHL99_02925) - 566198..566506 (-) 309 WP_003706588.1 AzlD family protein -
  OHL99_RS02930 (OHL99_02930) - 566503..567214 (-) 712 Protein_565 AzlC family ABC transporter permease -
  OHL99_RS02935 (OHL99_02935) dut 567380..567832 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24557.00 Da        Isoelectric Point: 9.6166

>NTDB_id=738974 OHL99_RS02900 WP_047916986.1 562799..563461(+) (pilH) [Neisseria gonorrhoeae strain 1081168]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNFKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=738974 OHL99_RS02900 WP_047916986.1 562799..563461(+) (pilH) [Neisseria gonorrhoeae strain 1081168]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTTCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.455

100

0.955