Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDN54_RS09100 Genome accession   NZ_CP107266
Coordinates   1723529..1723924 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9112     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718529..1728924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS09055 (NDN54_09055) - 1718834..1719079 (-) 246 WP_003689849.1 hypothetical protein -
  NDN54_RS09060 (NDN54_09060) - 1719191..1719619 (+) 429 WP_010359204.1 CopD family protein -
  NDN54_RS09065 (NDN54_09065) - 1719631..1720107 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  NDN54_RS09070 (NDN54_09070) - 1720137..1720625 (-) 489 WP_041421364.1 dihydrofolate reductase -
  NDN54_RS09075 (NDN54_09075) aroG 1720693..1721748 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  NDN54_RS09080 (NDN54_09080) - 1721910..1722137 (-) 228 WP_153707886.1 hypothetical protein -
  NDN54_RS09085 (NDN54_09085) - 1722172..1722321 (+) 150 WP_172764044.1 hypothetical protein -
  NDN54_RS09090 (NDN54_09090) - 1722363..1722659 (+) 297 WP_003698944.1 hypothetical protein -
  NDN54_RS09095 (NDN54_09095) - 1722656..1722895 (+) 240 WP_012503951.1 membrane protein -
  NDN54_RS09100 (NDN54_09100) comE 1723529..1723924 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDN54_RS09105 (NDN54_09105) - 1724029..1724145 (-) 117 Protein_1761 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=738936 NDN54_RS09100 WP_003703428.1 1723529..1723924(-) (comE) [Neisseria gonorrhoeae strain 9112]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=738936 NDN54_RS09100 WP_003703428.1 1723529..1723924(-) (comE) [Neisseria gonorrhoeae strain 9112]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1