Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QBL25_RS29005 Genome accession   NZ_CP122310
Coordinates   6570061..6572283 (+) Length   740 a.a.
NCBI ID   WP_409059897.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6565061..6577283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS28980 - 6565908..6566396 (-) 489 WP_409059894.1 DUF3515 domain-containing protein -
  QBL25_RS28985 - 6566417..6566650 (-) 234 WP_361720591.1 Lrp/AsnC ligand binding domain-containing protein -
  QBL25_RS28990 - 6566860..6567828 (+) 969 WP_409059895.1 thiamine-phosphate kinase -
  QBL25_RS28995 rpmB 6567902..6568087 (-) 186 WP_160507429.1 50S ribosomal protein L28 -
  QBL25_RS29000 - 6568306..6569988 (+) 1683 WP_409059896.1 DAK2 domain-containing protein -
  QBL25_RS29005 recG 6570061..6572283 (+) 2223 WP_409059897.1 ATP-dependent DNA helicase RecG Machinery gene
  QBL25_RS29010 rsmD 6572384..6572977 (+) 594 WP_409059898.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QBL25_RS29015 coaD 6573004..6573483 (+) 480 WP_365824281.1 pantetheine-phosphate adenylyltransferase -
  QBL25_RS29020 - 6573605..6574705 (+) 1101 WP_409059899.1 cell division initiation protein -
  QBL25_RS29025 - 6574876..6575520 (+) 645 WP_409062813.1 YceD family protein -
  QBL25_RS29030 rpmF 6575523..6575696 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  QBL25_RS29035 rnc 6575704..6576555 (+) 852 WP_409059900.1 ribonuclease III -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80409.09 Da        Isoelectric Point: 5.6265

>NTDB_id=738909 QBL25_RS29005 WP_409059897.1 6570061..6572283(+) (recG) [Streptomyces sp. SYP-A7185]
MDLVPALEEPLKKVVGPATAKVMAEHLDLHTVGDLLHHYPRRYAERGELTRLADLPLDEHVTVVAQVATARILTFNGGRG
QRLEVTITDGSGQLQLVFFGRGIHKPHKDLLPGTRAMFAGKASVFNRKMQLAHPAYELLKGDPDNAEEAVDSWAGALIPI
YPATAKLESWKIAKSVDAVLPSAREAVDPLPPSLRDGRELIPLPEALLKIHRPQTKADIEAARDRLKWDEAFVLQVALAR
RRYADAQLPAIARRPREGGLLDAFDAKLPFTLTEGQEKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDAG
GQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDQGTKVTLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIEDKV
QFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPSEDKP
HFLARAWERVREEVENGHQAYVVCPRIGDEPDEGADPKKAKKKAEKKAEEEATAEKRPPLAVVEVAEQLARGPLSGLKIE
VLHGRMQPDDKDAVMRRFAAGETQVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTDMP
EASPARARLAAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAEAREEAVTVVAADPELEHLPE
LRTALDALLDDEREQYLDKG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=738909 QBL25_RS29005 WP_409059897.1 6570061..6572283(+) (recG) [Streptomyces sp. SYP-A7185]
ATGGATCTCGTGCCCGCGCTCGAAGAACCCCTGAAGAAAGTGGTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
GGACCTGCACACCGTCGGCGACCTGCTGCACCACTACCCGCGCAGGTACGCGGAGCGGGGCGAGCTCACCCGCCTCGCCG
ACCTGCCGCTGGACGAGCACGTCACGGTGGTCGCCCAGGTCGCGACGGCGCGCATCCTGACGTTCAACGGCGGCAGGGGC
CAGCGCCTCGAAGTGACGATCACCGACGGCAGCGGCCAGCTCCAGCTGGTCTTCTTCGGCCGGGGCATCCACAAGCCGCA
CAAGGACCTGCTGCCCGGCACGCGCGCGATGTTCGCGGGCAAGGCGTCCGTCTTCAACCGCAAGATGCAGCTCGCCCACC
CGGCGTACGAACTCCTGAAGGGCGACCCGGACAACGCCGAAGAGGCGGTCGACTCCTGGGCCGGAGCCCTCATCCCGATC
TACCCCGCCACGGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCCGTGGACGCGGTCCTGCCCAGCGCCCGGGAGGCCGT
CGACCCGCTGCCGCCGAGCCTGCGCGACGGCCGGGAGCTGATCCCGCTCCCCGAGGCGCTCCTGAAGATCCACCGGCCGC
AGACGAAGGCGGACATCGAAGCCGCCCGCGACCGCCTGAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTGGCCAGG
CGCCGGTACGCGGACGCGCAACTCCCCGCGATCGCCCGCCGCCCCCGCGAGGGAGGCCTGCTCGACGCGTTCGACGCGAA
GCTGCCCTTCACGCTCACCGAGGGCCAGGAGAAGGTCTCCAAGGAGATCTTCGACGACCTGGCGACCGAGCACCCGATGC
ACCGCCTCCTCCAGGGAGAGGTCGGCAGCGGCAAGACGATGGTGGCCCTGCGCGCCATGCTCGCCGTCGTCGACGCGGGC
GGACAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCCATCACCGAGATGATGGGCGAGCT
GGCCGAGGGCGGCATGCTCGGCGGCTCGGACCAGGGCACGAAGGTCACGCTGCTCACCGGCTCCATGGGCACGGCGGCCC
GGCGCCAGGCCCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACGCACGCGCTGATCGAGGACAAGGTC
CAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAACAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTGCGCGGCAA
GGGCAAGCAGCCCCCGCACCTCCTGGTCATGACGGCCACGCCCATTCCGCGCACGGTCGCGATGACGGTCTTCGGCGACC
TGGAGACCTCGGTCCTCGACCAGCTCCCCGCGGGCCGTTCACCCATCGCCAGCCACGTCGTGCCCTCCGAGGACAAGCCC
CACTTCCTGGCCCGCGCGTGGGAGCGCGTGCGCGAGGAGGTGGAGAACGGCCACCAGGCGTACGTGGTGTGCCCCCGGAT
CGGCGACGAACCCGACGAGGGCGCCGACCCGAAGAAGGCCAAGAAGAAGGCCGAGAAGAAGGCCGAGGAAGAAGCCACCG
CCGAGAAGCGGCCCCCGCTCGCCGTCGTCGAGGTCGCCGAGCAGCTCGCCCGCGGCCCGCTGAGCGGTCTGAAGATCGAG
GTCCTGCACGGCCGCATGCAGCCCGACGACAAGGACGCGGTGATGCGCCGCTTCGCCGCCGGCGAGACCCAGGTCCTGGT
CGCGACGACGGTCATCGAGGTCGGCGTGAACGTCCCGAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCG
TATCGCAGCTGCACCAGCTGCGCGGTCGCGTCGGCCGTGGCTCGGCCCCGGGCCTGTGCCTCCTGGTCACCGACATGCCC
GAGGCGAGCCCCGCCCGCGCCCGCCTGGCGGCCGTGGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGGATCGACCTGGA
GCAGCGCCGCGAGGGCGACGTCCTCGGCCAGGCGCAGTCCGGTGTCCGCTCCAGCCTCAGGATGCTCGCGGTCATCGAGG
ACGAGGAGGTCATCGCCGAGGCCCGCGAGGAGGCCGTCACGGTGGTCGCGGCCGACCCGGAGCTGGAGCACCTGCCCGAG
CTGCGCACCGCCCTGGACGCCCTCCTGGACGACGAGCGCGAGCAGTACCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(294-446)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(655-716)

Helicase conserved C-terminal domain (Helicase_C)

(552-627)

RecG wedge domain (RecG_wedge)

(13-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.298

95.27

0.365
  recG/mmsA Streptococcus pneumoniae R6

36.096

100

0.365
  recG/mmsA Streptococcus pneumoniae R36A

36.096

100

0.365