Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NDN54_RS00490 Genome accession   NZ_CP107266
Coordinates   105982..106581 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain 9112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100982..111581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS00475 (NDN54_00475) pilQ 102557..104752 (-) 2196 WP_047954482.1 type IV pilus secretin PilQ Machinery gene
  NDN54_RS00480 (NDN54_00480) pilP 104771..105316 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  NDN54_RS00485 (NDN54_00485) - 105334..105981 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  NDN54_RS00490 (NDN54_00490) pilN 105982..106581 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  NDN54_RS00495 (NDN54_00495) pilM 106584..107699 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  NDN54_RS00500 (NDN54_00500) - 107851..110247 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  NDN54_RS00505 (NDN54_00505) yihA 110368..110997 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=738903 NDN54_RS00490 WP_003700890.1 105982..106581(-) (pilN) [Neisseria gonorrhoeae strain 9112]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=738903 NDN54_RS00490 WP_003700890.1 105982..106581(-) (pilN) [Neisseria gonorrhoeae strain 9112]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97