Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NDN54_RS00480 Genome accession   NZ_CP107266
Coordinates   104771..105316 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9112     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99771..110316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS00470 (NDN54_00470) - 100777..101289 (-) 513 WP_003687349.1 shikimate kinase -
  NDN54_RS00475 (NDN54_00475) pilQ 102557..104752 (-) 2196 WP_047954482.1 type IV pilus secretin PilQ Machinery gene
  NDN54_RS00480 (NDN54_00480) pilP 104771..105316 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  NDN54_RS00485 (NDN54_00485) - 105334..105981 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  NDN54_RS00490 (NDN54_00490) pilN 105982..106581 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  NDN54_RS00495 (NDN54_00495) pilM 106584..107699 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  NDN54_RS00500 (NDN54_00500) - 107851..110247 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=738902 NDN54_RS00480 WP_003687351.1 104771..105316(-) (pilP) [Neisseria gonorrhoeae strain 9112]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=738902 NDN54_RS00480 WP_003687351.1 104771..105316(-) (pilP) [Neisseria gonorrhoeae strain 9112]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983