Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QBL25_RS23425 Genome accession   NZ_CP122310
Coordinates   5335544..5336953 (-) Length   469 a.a.
NCBI ID   WP_409058973.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5330544..5341953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS23405 - 5331920..5332573 (+) 654 WP_409058969.1 response regulator -
  QBL25_RS23410 - 5332640..5333302 (-) 663 WP_409058970.1 phosphatase PAP2 family protein -
  QBL25_RS23415 - 5333487..5334305 (+) 819 WP_409058971.1 hypothetical protein -
  QBL25_RS23420 disA 5334340..5335464 (-) 1125 WP_409058972.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QBL25_RS23425 radA/sms 5335544..5336953 (-) 1410 WP_409058973.1 DNA repair protein RadA Machinery gene
  QBL25_RS23430 - 5337197..5338912 (+) 1716 WP_409058974.1 BACON domain-containing protein -
  QBL25_RS23435 - 5338909..5339751 (-) 843 WP_409058975.1 hypothetical protein -
  QBL25_RS23440 - 5339823..5340755 (+) 933 WP_409058976.1 Ppx/GppA family phosphatase -
  QBL25_RS23445 - 5340868..5341692 (+) 825 WP_409058977.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49728.83 Da        Isoelectric Point: 8.0102

>NTDB_id=738890 QBL25_RS23425 WP_409058973.1 5335544..5336953(-) (radA/sms) [Streptomyces sp. SYP-A7185]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGEVDGRQATARSTGVPEF
DRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGVAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRTEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKIPAGMKVTEVADMGDALRVLPRSRRREAPREDEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=738890 QBL25_RS23425 WP_409058973.1 5335544..5336953(-) (radA/sms) [Streptomyces sp. SYP-A7185]
ATGGCTGCCCGTACGAAATCCGGCAAAGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACCGCCCCCGGCC
GCGTCACCTCCTCCGCCCTGCCCATCGGCGAGGTCGACGGCCGGCAGGCCACCGCACGCTCGACCGGCGTCCCCGAGTTC
GACCGCGTCCTGGGCGGCGGCCTCGTCCCCGGCGCCGTGGCGCTGCTCGCGGGTGAGCCGGGCGTCGGCAAGTCGACGCT
GCTCCTGGACGTGGCGGCGAAGTCGGCGAGCGACGAGCACCGCACGCTCTACGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCATCCACGACCACCTGTATCTGGCGGCGGAGACCGATCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTGATCCTCGACTCGGTCCAGACGATCGCCTCCCCGGAGATCGACGGGGC
GCCGGGCGGCGTCGCCCAGGTCCGCGAGGTGGCGGGCGCCCTCATCCGCGCCTCCAAGGAGCGCGGCATGGCCACGCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGGCTCCTGGAGCACCTCGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGCCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGCACGACGGACGAAGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGACCGACCCCAGCGGACTCTTCCTCACCCGCCGCACGGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACGCTCGAAGGCCGCCGCCCCCTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGGGGCCG
GATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAACTCTCCGAGCCGGCCGCGGACCTCG
CGATCGCCCTCGCCCTGGCCAGCGCGGCGAGCGACACCCCGTTGCCGAAAAATCTCGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCAGGCTGGCCGAAGCGCACCGTCTGGGCTTCACGCACGCCCTCGT
CCCGGCCGATCCGGGCAAGATCCCGGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCGCTGCGAGTCCTTC
CGAGGTCGCGTCGCAGAGAGGCCCCACGGGAGGACGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus mitis SK321

44.706

90.618

0.405
  radA Streptococcus mitis NCTC 12261

44.706

90.618

0.405