Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QBL01_RS09590 Genome accession   NZ_CP121769
Coordinates   1927879..1929708 (+) Length   609 a.a.
NCBI ID   WP_021112088.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922879..1934708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS09550 (QBL01_09550) - 1923322..1923537 (-) 216 WP_005712699.1 hypothetical protein -
  QBL01_RS09555 (QBL01_09555) - 1923539..1924114 (-) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  QBL01_RS09560 (QBL01_09560) - 1924118..1924852 (-) 735 WP_021112092.1 putative DNA-binding domain-containing protein -
  QBL01_RS09565 (QBL01_09565) - 1924861..1925757 (-) 897 WP_200859951.1 DUF692 family protein -
  QBL01_RS09570 (QBL01_09570) - 1925826..1926128 (-) 303 WP_010785931.1 hypothetical protein -
  QBL01_RS09575 (QBL01_09575) - 1926149..1926595 (-) 447 WP_021112089.1 DoxX family protein -
  QBL01_RS09580 (QBL01_09580) dinR/lexA 1926859..1927488 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  QBL01_RS09585 (QBL01_09585) cyaY 1927571..1927879 (+) 309 WP_010785933.1 iron donor protein CyaY -
  QBL01_RS09590 (QBL01_09590) recQ 1927879..1929708 (+) 1830 WP_021112088.1 ATP-dependent DNA helicase RecQ Machinery gene
  QBL01_RS09595 (QBL01_09595) ligA 1929766..1931793 (-) 2028 WP_021112087.1 NAD-dependent DNA ligase LigA -
  QBL01_RS09600 (QBL01_09600) zipA 1931857..1932675 (-) 819 WP_021112086.1 cell division protein ZipA -
  QBL01_RS09605 (QBL01_09605) cysZ 1932784..1933539 (+) 756 WP_021112085.1 sulfate transporter CysZ -
  QBL01_RS09615 (QBL01_09615) frdD 1933858..1934202 (-) 345 WP_021112084.1 fumarate reductase subunit FrdD -
  QBL01_RS09620 (QBL01_09620) frdC 1934216..1934611 (-) 396 WP_016528237.1 fumarate reductase subunit FrdC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69113.32 Da        Isoelectric Point: 7.6645

>NTDB_id=738828 QBL01_RS09590 WP_021112088.1 1927879..1929708(+) (recQ) [Glaesserella parasuis strain Z44]
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSRRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRFSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIACD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=738828 QBL01_RS09590 WP_021112088.1 1927879..1929708(+) (recQ) [Glaesserella parasuis strain Z44]
ATGTCAGTTATACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCGGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCAAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCATACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGGATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCGCCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GATGCAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTACTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCGCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTCAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGCTTGTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

DEAD/DEAH box helicase (DEAD)

(25-181)

RQC domain (RQC)

(402-509)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.358

97.209

0.383