Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   QBL01_RS09580 Genome accession   NZ_CP121769
Coordinates   1926859..1927488 (+) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1921859..1932488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS09550 (QBL01_09550) - 1923322..1923537 (-) 216 WP_005712699.1 hypothetical protein -
  QBL01_RS09555 (QBL01_09555) - 1923539..1924114 (-) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  QBL01_RS09560 (QBL01_09560) - 1924118..1924852 (-) 735 WP_021112092.1 putative DNA-binding domain-containing protein -
  QBL01_RS09565 (QBL01_09565) - 1924861..1925757 (-) 897 WP_200859951.1 DUF692 family protein -
  QBL01_RS09570 (QBL01_09570) - 1925826..1926128 (-) 303 WP_010785931.1 hypothetical protein -
  QBL01_RS09575 (QBL01_09575) - 1926149..1926595 (-) 447 WP_021112089.1 DoxX family protein -
  QBL01_RS09580 (QBL01_09580) dinR/lexA 1926859..1927488 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  QBL01_RS09585 (QBL01_09585) cyaY 1927571..1927879 (+) 309 WP_010785933.1 iron donor protein CyaY -
  QBL01_RS09590 (QBL01_09590) recQ 1927879..1929708 (+) 1830 WP_021112088.1 ATP-dependent DNA helicase RecQ Machinery gene
  QBL01_RS09595 (QBL01_09595) ligA 1929766..1931793 (-) 2028 WP_021112087.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=738827 QBL01_RS09580 WP_005712712.1 1926859..1927488(+) (dinR/lexA) [Glaesserella parasuis strain Z44]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738827 QBL01_RS09580 WP_005712712.1 1926859..1927488(+) (dinR/lexA) [Glaesserella parasuis strain Z44]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGGAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378