Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QBL01_RS04165 Genome accession   NZ_CP121769
Coordinates   796641..797891 (-) Length   416 a.a.
NCBI ID   WP_042906659.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 791641..802891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS04145 (QBL01_04145) pilB 792111..793496 (+) 1386 WP_279378642.1 GspE/PulE family protein Machinery gene
  QBL01_RS04150 (QBL01_04150) pilC 793489..794685 (+) 1197 WP_279378643.1 type II secretion system F family protein Machinery gene
  QBL01_RS04155 (QBL01_04155) - 794682..795350 (+) 669 WP_021117769.1 prepilin peptidase -
  QBL01_RS04160 (QBL01_04160) dapE 795434..796567 (+) 1134 WP_021117768.1 succinyl-diaminopimelate desuccinylase -
  QBL01_RS04165 (QBL01_04165) clpX 796641..797891 (-) 1251 WP_042906659.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  QBL01_RS04170 (QBL01_04170) clpP 797898..798479 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  QBL01_RS04175 (QBL01_04175) - 798580..798969 (+) 390 WP_075606473.1 SufE family protein -
  QBL01_RS04180 (QBL01_04180) - 799047..799805 (-) 759 WP_279378644.1 SLC13 family permease -
  QBL01_RS04185 (QBL01_04185) - 800181..800801 (+) 621 WP_261482446.1 L-threonylcarbamoyladenylate synthase -
  QBL01_RS04190 (QBL01_04190) rluB 800969..801988 (+) 1020 WP_071610755.1 23S rRNA pseudouridine(2605) synthase RluB -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45775.48 Da        Isoelectric Point: 5.2866

>NTDB_id=738805 QBL01_RS04165 WP_042906659.1 796641..797891(-) (clpX) [Glaesserella parasuis strain Z44]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVGKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=738805 QBL01_RS04165 WP_042906659.1 796641..797891(-) (clpX) [Glaesserella parasuis strain Z44]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCATTAATTGAAGGCAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCATTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTATTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTTTCTGACAA
TAAAGAGAGTGAAGGCGTTGAGTTGGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTGTCAGGTGAAGGGGTTCAGC
AGGCGTTACTTAAATTGATTGAAGGTACTATCGCGAATATCAATCCACAAGGTGGACGCAAACACCCGAAACAAGAAACA
ATCCCAGTTGATACCTCTAAAATTCTCTTTATCTGTGGCGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
GAATACACAAGGTGGAATTGGCTTTAAAGCAGAATTGAAAAAAGATAAAGATCGTCAAGCACTCACTGAATTATTCAAAC
AAGTTGAACCTGAAGATTTGGTAAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAGAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTGTTCAA
AATGGAAGGTGTGGAATTAAAATTCACCAAAGATGCTTTAGTGGCAATTGCTCAAAAAGCGATTTCTCGTAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGCTACTCGACACTATGTATGATTTACCGTCCTTGAAAGCAAGTAAAGTG
ACAGTAGGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.961

98.798

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.167

98.077

0.531