Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBL01_RS03095 Genome accession   NZ_CP121769
Coordinates   574254..574595 (-) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569254..579595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS03065 (QBL01_03065) - 570077..570604 (-) 528 WP_021113777.1 DUF1523 family protein -
  QBL01_RS03070 (QBL01_03070) - 570644..571426 (-) 783 WP_021117379.1 YchF/TatD family DNA exonuclease -
  QBL01_RS03075 (QBL01_03075) - 571440..571937 (-) 498 WP_021117378.1 GNAT family N-acetyltransferase -
  QBL01_RS03080 (QBL01_03080) - 571938..572216 (-) 279 WP_021111037.1 DUF1778 domain-containing protein -
  QBL01_RS03085 (QBL01_03085) epmA 572270..573250 (-) 981 WP_035494234.1 elongation factor P--(R)-beta-lysine ligase -
  QBL01_RS03090 (QBL01_03090) - 573390..574154 (+) 765 Protein_599 IS5 family transposase -
  QBL01_RS03095 (QBL01_03095) comEA/comE1 574254..574595 (-) 342 WP_021112680.1 helix-hairpin-helix domain-containing protein Machinery gene
  QBL01_RS03100 (QBL01_03100) - 574853..576118 (+) 1266 WP_279378607.1 LysM-like peptidoglycan-binding domain-containing protein -
  QBL01_RS03105 (QBL01_03105) - 576178..576576 (+) 399 WP_035494232.1 MliC family protein -
  QBL01_RS03110 (QBL01_03110) waaF 576585..577637 (+) 1053 WP_075606192.1 lipopolysaccharide heptosyltransferase II -
  QBL01_RS03115 (QBL01_03115) - 577733..578320 (+) 588 WP_279378608.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=738797 QBL01_RS03095 WP_021112680.1 574254..574595(-) (comEA/comE1) [Glaesserella parasuis strain Z44]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=738797 QBL01_RS03095 WP_021112680.1 574254..574595(-) (comEA/comE1) [Glaesserella parasuis strain Z44]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602