Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N5898_RS08380 Genome accession   NZ_CP107256
Coordinates   1616483..1617256 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1611483..1622256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS08365 (N5898_08365) - 1612332..1614266 (-) 1935 WP_070317452.1 RNB domain-containing ribonuclease -
  N5898_RS08370 (N5898_08370) ilvC 1614385..1615407 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N5898_RS08375 (N5898_08375) - 1615411..1616493 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  N5898_RS08380 (N5898_08380) dprA 1616483..1617256 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  N5898_RS08385 (N5898_08385) ruvX 1617253..1617636 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  N5898_RS08390 (N5898_08390) - 1617665..1618504 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N5898_RS08395 (N5898_08395) msrA 1618680..1619177 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N5898_RS08400 (N5898_08400) ppa 1619218..1619736 (-) 519 WP_002855031.1 inorganic diphosphatase -
  N5898_RS08405 (N5898_08405) adk 1619746..1620324 (-) 579 WP_002855137.1 adenylate kinase -
  N5898_RS08410 (N5898_08410) aspS 1620321..1622072 (-) 1752 WP_002869354.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=738795 N5898_RS08380 WP_002858613.1 1616483..1617256(+) (dprA) [Campylobacter jejuni strain PNUSAC004956]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=738795 N5898_RS08380 WP_002858613.1 1616483..1617256(+) (dprA) [Campylobacter jejuni strain PNUSAC004956]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455