Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   N5898_RS08190 Genome accession   NZ_CP107256
Coordinates   1574593..1575243 (-) Length   216 a.a.
NCBI ID   WP_002868899.1    Uniprot ID   A0A5T1MWU6
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569593..1580243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS08155 (N5898_08155) - 1569971..1570975 (+) 1005 WP_024088100.1 hypothetical protein -
  N5898_RS08160 (N5898_08160) tlyA 1570972..1571733 (+) 762 WP_002868894.1 TlyA family RNA methyltransferase -
  N5898_RS08165 (N5898_08165) ribF 1571699..1572553 (+) 855 WP_011812722.1 bifunctional riboflavin kinase/FAD synthetase -
  N5898_RS08170 (N5898_08170) cmoA 1572540..1573250 (+) 711 WP_079254181.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  N5898_RS08175 (N5898_08175) - 1573240..1573461 (-) 222 WP_079005306.1 EexN family lipoprotein -
  N5898_RS08180 (N5898_08180) - 1573452..1573892 (-) 441 WP_002868898.1 EexN family lipoprotein -
  N5898_RS08185 (N5898_08185) - 1573950..1574582 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  N5898_RS08190 (N5898_08190) CJE0566 1574593..1575243 (-) 651 WP_002868899.1 DNA/RNA non-specific endonuclease Regulator
  N5898_RS08195 (N5898_08195) nth 1575240..1575866 (-) 627 WP_002857170.1 endonuclease III -
  N5898_RS08200 (N5898_08200) peb4 1575947..1576768 (+) 822 WP_002856774.1 peptidylprolyl isomerase PEB4 -
  N5898_RS08205 (N5898_08205) fbaA 1576768..1577832 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  N5898_RS08210 (N5898_08210) - 1577927..1579369 (+) 1443 WP_002857090.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25532.29 Da        Isoelectric Point: 9.8262

>NTDB_id=738794 N5898_RS08190 WP_002868899.1 1574593..1575243(-) (CJE0566) [Campylobacter jejuni strain PNUSAC004956]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSSYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIRNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=738794 N5898_RS08190 WP_002868899.1 1574593..1575243(-) (CJE0566) [Campylobacter jejuni strain PNUSAC004956]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTAGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAGAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1MWU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63