Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   N5898_RS01005 Genome accession   NZ_CP107256
Coordinates   192211..192870 (-) Length   219 a.a.
NCBI ID   WP_052775421.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 187211..197870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS00965 (N5898_00965) - 187550..188404 (-) 855 WP_052775417.1 lambda-exonuclease family protein -
  N5898_RS00970 (N5898_00970) - 188406..188633 (-) 228 WP_071615704.1 helix-turn-helix domain-containing protein -
  N5898_RS00975 (N5898_00975) - 188624..188881 (-) 258 WP_032595717.1 hypothetical protein -
  N5898_RS00980 (N5898_00980) - 188872..189141 (-) 270 WP_002875049.1 hypothetical protein -
  N5898_RS00985 (N5898_00985) - 189702..189974 (-) 273 WP_052775416.1 hypothetical protein -
  N5898_RS00990 (N5898_00990) - 190116..190373 (+) 258 WP_048818571.1 hypothetical protein -
  N5898_RS00995 (N5898_00995) - 190446..190901 (-) 456 WP_052775415.1 hypothetical protein -
  N5898_RS01000 (N5898_01000) - 190888..192111 (-) 1224 WP_052775414.1 AAA family ATPase -
  N5898_RS01005 (N5898_01005) CJE0566 192211..192870 (-) 660 WP_052775421.1 DNA/RNA non-specific endonuclease Regulator
  N5898_RS01010 (N5898_01010) - 192890..193663 (-) 774 WP_052775413.1 hypothetical protein -
  N5898_RS01015 (N5898_01015) - 193660..194391 (-) 732 WP_052775412.1 helix-turn-helix transcriptional regulator -
  N5898_RS01020 (N5898_01020) - 194532..194747 (+) 216 WP_002865054.1 hypothetical protein -
  N5898_RS01025 (N5898_01025) - 194899..195264 (-) 366 WP_002874369.1 hypothetical protein -
  N5898_RS01030 (N5898_01030) - 195307..196308 (+) 1002 WP_052775411.1 hypothetical protein -
  N5898_RS01035 (N5898_01035) - 196319..196969 (+) 651 WP_002871222.1 hypothetical protein -
  N5898_RS01040 (N5898_01040) - 196987..197367 (+) 381 WP_002896784.1 hypothetical protein -
  N5898_RS01045 (N5898_01045) - 197367..197753 (+) 387 WP_002795630.1 terminase small subunit -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25729.42 Da        Isoelectric Point: 10.0545

>NTDB_id=738769 N5898_RS01005 WP_052775421.1 192211..192870(-) (CJE0566) [Campylobacter jejuni strain PNUSAC004956]
MKKLILLPLLSTLAFADYTQYKPSEEFAKYFTKQSCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGKQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEDESIRKYKVNCGKIHI

Nucleotide


Download         Length: 660 bp        

>NTDB_id=738769 N5898_RS01005 WP_052775421.1 192211..192870(-) (CJE0566) [Campylobacter jejuni strain PNUSAC004956]
GTGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTTGCTGACTATACGCAATATAAACCAAGCGAAGAGTT
TGCTAAGTATTTTACTAAGCAAAGTTGTTCGCAAGTTTTAGATAAATTCTATTATCTAAATTGCTATGATTATAATCTAA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCAAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGATAATTTTAAAGAATGTTACCAAGTGCCAAATCATGAAGTAGAAGATGAGAGTATAAGAAAATATAAGGTTAATT
GTGGTAAAATTCATATTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

95.853

99.087

0.95
  CJE1441 Campylobacter jejuni RM1221

92.523

97.717

0.904