Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QBK97_RS07030 Genome accession   NZ_CP121768
Coordinates   1443478..1445316 (+) Length   612 a.a.
NCBI ID   WP_261471501.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438478..1450316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS07000 (QBK97_07000) - 1439079..1439694 (-) 616 Protein_1357 IS1595 family transposase -
  QBK97_RS07005 (QBK97_07005) - 1439734..1440028 (+) 295 Protein_1358 hypothetical protein -
  QBK97_RS07010 (QBK97_07010) sodA 1440077..1440697 (-) 621 WP_075621057.1 superoxide dismutase [Mn] -
  QBK97_RS07015 (QBK97_07015) modC 1440916..1441977 (-) 1062 WP_075630415.1 molybdenum ABC transporter ATP-binding protein ModC -
  QBK97_RS07020 (QBK97_07020) modB 1441977..1442678 (-) 702 WP_075630432.1 molybdate ABC transporter permease subunit -
  QBK97_RS07025 (QBK97_07025) pgsA 1442834..1443382 (+) 549 WP_021111268.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBK97_RS07030 (QBK97_07030) uvrC 1443478..1445316 (+) 1839 WP_261471501.1 excinuclease ABC subunit UvrC Machinery gene
  QBK97_RS07035 (QBK97_07035) htpX 1445354..1446205 (-) 852 WP_010787063.1 protease HtpX -
  QBK97_RS07040 (QBK97_07040) dinB 1446311..1447381 (-) 1071 WP_035495819.1 DNA polymerase IV -
  QBK97_RS07045 (QBK97_07045) - 1447525..1448433 (+) 909 WP_021109738.1 lysine exporter LysO family protein -
  QBK97_RS07050 (QBK97_07050) ampD 1448426..1448992 (-) 567 WP_010787066.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBK97_RS07055 (QBK97_07055) - 1449050..1449889 (+) 840 WP_075630413.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69478.60 Da        Isoelectric Point: 8.8979

>NTDB_id=738756 QBK97_RS07030 WP_261471501.1 1443478..1445316(+) (uvrC) [Glaesserella parasuis strain d76]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMETAAEDLDFVAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVSKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=738756 QBK97_RS07030 WP_261471501.1 1443478..1445316(+) (uvrC) [Glaesserella parasuis strain d76]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACTCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTAGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTTCGTGACGACAAATCTTACCCTTATATTTTGCTTAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGTAAAAAAATCGCAGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTGGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATTAGCAAAATGG
AAACAGCAGCGGAAGATCTGGATTTTGTAGCTGCCGCGCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAACGAACGCTTGGACGATCTCGATATTATTTCGATTGCCTATCAACACGGTATTGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGTTATTTCCCCAAAGTGCCGAACCATACGGAACTTGCTG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGAGGCGAAAAAAGCCGTTATCTTGCTCTTGCTAAAACCAACGCAATGGCAGCACTGACTTTGCAACTCAAGCAAGATG
CTCGTATCCAAACCCGTTATGAAGCCTTGCAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGCTTTGATATC
AGTCACACGATGGGCGAACAAACAGTCGCTTCTTGTGTTGTATTTGATGAAAACGGCCCGTTAAAATCTGACTATCGCCG
TTTTAACATTGAAGGTATTACAGGGGGCGATGATTATGCCGCAATGGAACAAGCCCTGCTCAAACGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCCGATATTATCTTTATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTATCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.583

98.693

0.371
  uvrC Streptococcus pneumoniae R6

37.252

98.693

0.368
  uvrC Streptococcus pneumoniae D39

37.252

98.693

0.368