Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   QBK97_RS03390 Genome accession   NZ_CP121768
Coordinates   667128..667757 (-) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 662128..672757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS03375 (QBK97_03375) ligA 662823..664850 (+) 2028 WP_279368287.1 NAD-dependent DNA ligase LigA -
  QBK97_RS03380 (QBK97_03380) recQ 664908..666737 (-) 1830 WP_021114736.1 ATP-dependent DNA helicase RecQ Machinery gene
  QBK97_RS03385 (QBK97_03385) cyaY 666737..667045 (-) 309 WP_012621496.1 iron donor protein CyaY -
  QBK97_RS03390 (QBK97_03390) dinR/lexA 667128..667757 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  QBK97_RS03395 (QBK97_03395) - 668021..668467 (+) 447 WP_021112089.1 DoxX family protein -
  QBK97_RS03400 (QBK97_03400) - 668488..668790 (+) 303 WP_010785931.1 hypothetical protein -
  QBK97_RS03405 (QBK97_03405) - 668859..669755 (+) 897 WP_173657635.1 DUF692 family protein -
  QBK97_RS03410 (QBK97_03410) - 669764..670498 (+) 735 WP_021118768.1 putative DNA-binding domain-containing protein -
  QBK97_RS03415 (QBK97_03415) - 670502..671077 (+) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  QBK97_RS03420 (QBK97_03420) - 671079..671294 (+) 216 WP_005712699.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=738744 QBK97_RS03390 WP_005712712.1 667128..667757(-) (dinR/lexA) [Glaesserella parasuis strain d76]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738744 QBK97_RS03390 WP_005712712.1 667128..667757(-) (dinR/lexA) [Glaesserella parasuis strain d76]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGGAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378