Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QBK97_RS03380 Genome accession   NZ_CP121768
Coordinates   664908..666737 (-) Length   609 a.a.
NCBI ID   WP_021114736.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659908..671737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS03350 (QBK97_03350) frdC 660010..660402 (+) 393 WP_160413898.1 fumarate reductase subunit FrdC -
  QBK97_RS03355 (QBK97_03355) frdD 660413..660757 (+) 345 WP_044009110.1 fumarate reductase subunit FrdD -
  QBK97_RS03365 (QBK97_03365) cysZ 661076..661831 (-) 756 WP_021114609.1 sulfate transporter CysZ -
  QBK97_RS03370 (QBK97_03370) zipA 661941..662759 (+) 819 WP_016528235.1 cell division protein ZipA -
  QBK97_RS03375 (QBK97_03375) ligA 662823..664850 (+) 2028 WP_279368287.1 NAD-dependent DNA ligase LigA -
  QBK97_RS03380 (QBK97_03380) recQ 664908..666737 (-) 1830 WP_021114736.1 ATP-dependent DNA helicase RecQ Machinery gene
  QBK97_RS03385 (QBK97_03385) cyaY 666737..667045 (-) 309 WP_012621496.1 iron donor protein CyaY -
  QBK97_RS03390 (QBK97_03390) dinR/lexA 667128..667757 (-) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  QBK97_RS03395 (QBK97_03395) - 668021..668467 (+) 447 WP_021112089.1 DoxX family protein -
  QBK97_RS03400 (QBK97_03400) - 668488..668790 (+) 303 WP_010785931.1 hypothetical protein -
  QBK97_RS03405 (QBK97_03405) - 668859..669755 (+) 897 WP_173657635.1 DUF692 family protein -
  QBK97_RS03410 (QBK97_03410) - 669764..670498 (+) 735 WP_021118768.1 putative DNA-binding domain-containing protein -
  QBK97_RS03415 (QBK97_03415) - 670502..671077 (+) 576 WP_021112093.1 sigma-70 family RNA polymerase sigma factor -
  QBK97_RS03420 (QBK97_03420) - 671079..671294 (+) 216 WP_005712699.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69026.22 Da        Isoelectric Point: 7.5134

>NTDB_id=738743 QBK97_RS03380 WP_021114736.1 664908..666737(-) (recQ) [Glaesserella parasuis strain d76]
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLINGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATAYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=738743 QBK97_RS03380 WP_021114736.1 664908..666737(-) (recQ) [Glaesserella parasuis strain d76]
ATGTCAGTTACACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGTAAAGATTGCTTGGTGATTATGACAACAGGGGGAGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTGATTTCGCTAATGAAAGATCAGGTAGATCAA
CTGCTTATCAATGGTGTTGAAGCTGGCTATATTAATTCCACTCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCAGGACAACTCAAGCTACTTTACCTTTCGCCCGAAAAGGTAATGACATCCAATTTTTTCCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCCCATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGCTAGAAGATCCCCACACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGTAGTCAGCAAGGAAAAAGTGGTATTGTTTATTGTAAT
AGCCGTAAGAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCACCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GGTACAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTATTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCTCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCAACAGCTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAAGAAAATATCCCCCCTTACGTCGTTTTCAATGATGCCACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGACTTATTAGAGAGCATTTATATCATATAGAAAGTATTGTTTGTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(25-181)

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

HRDC domain (HRDC)

(530-596)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

RQC domain (RQC)

(402-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.527

97.209

0.384