Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OEG85_RS05930 Genome accession   NZ_CP107241
Coordinates   1429348..1430742 (-) Length   464 a.a.
NCBI ID   WP_268214356.1    Uniprot ID   A0AA47EUB3
Organism   Xanthomonas hortorum strain Oregano 108     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424348..1435742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS05910 (OEG85_05910) - 1424834..1425978 (+) 1145 WP_268211553.1 IS3 family transposase -
  OEG85_RS05915 (OEG85_05915) pilA 1426281..1426697 (+) 417 WP_268214354.1 pilin Machinery gene
  OEG85_RS05920 (OEG85_05920) - 1426807..1427205 (+) 399 WP_313770514.1 pilin -
  OEG85_RS05925 (OEG85_05925) pilB 1427270..1429006 (+) 1737 WP_268214355.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OEG85_RS05930 (OEG85_05930) pilR 1429348..1430742 (-) 1395 WP_268214356.1 sigma-54 dependent transcriptional regulator Regulator
  OEG85_RS05935 (OEG85_05935) - 1430886..1432499 (-) 1614 WP_006448368.1 HAMP domain-containing sensor histidine kinase -
  OEG85_RS05940 (OEG85_05940) sucC 1432732..1433901 (+) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  OEG85_RS05945 (OEG85_05945) sucD 1433926..1434801 (+) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50221.58 Da        Isoelectric Point: 6.3587

>NTDB_id=738723 OEG85_RS05930 WP_268214356.1 1429348..1430742(-) (pilR) [Xanthomonas hortorum strain Oregano 108]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEISKQYPQTPVG
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=738723 OEG85_RS05930 WP_268214356.1 1429348..1430742(-) (pilR) [Xanthomonas hortorum strain Oregano 108]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCGGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTCTGCCTGA
CCGACATGCGCCTGCCAGACGGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGGG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCGCCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTTTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAACTGCTGCGGGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCACGCAGCCACGGCCGGCCAATCCCGCTGCTGACCCAGTCAGCCCTGGA
TGCACTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCTCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAAGCGCTAGAAGAGAATCGTTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGGGCGC
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489