Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QBE57_RS03990 Genome accession   NZ_CP121670
Coordinates   802271..803341 (-) Length   356 a.a.
NCBI ID   WP_012775101.1    Uniprot ID   A0A0H3MV97
Organism   Streptococcus suis strain HBXY-SL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797271..808341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS03965 relB 798483..798734 (+) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  QBE57_RS03970 - 798718..798975 (+) 258 WP_011922404.1 type II toxin-antitoxin system RelE family toxin -
  QBE57_RS03975 braR 799014..799679 (+) 666 WP_012775103.1 response regulator transcription factor Regulator
  QBE57_RS03980 - 799676..800617 (+) 942 WP_012775102.1 sensor histidine kinase -
  QBE57_RS03985 - 800693..802201 (+) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  QBE57_RS03990 xerS 802271..803341 (-) 1071 WP_012775101.1 tyrosine recombinase XerS Machinery gene
  QBE57_RS03995 - 803700..804730 (-) 1031 Protein_794 Abi family protein -
  QBE57_RS04000 - 805312..805749 (-) 438 WP_011922397.1 AAA family ATPase -
  QBE57_RS04005 - 805814..806554 (-) 741 WP_011922396.1 DUF3307 domain-containing protein -
  QBE57_RS04010 - 806558..807225 (-) 668 Protein_797 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41485.66 Da        Isoelectric Point: 9.2257

>NTDB_id=738563 QBE57_RS03990 WP_012775101.1 802271..803341(-) (xerS) [Streptococcus suis strain HBXY-SL]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=738563 QBE57_RS03990 WP_012775101.1 802271..803341(-) (xerS) [Streptococcus suis strain HBXY-SL]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAATGGTTACAGG
ATTCGGATTTGGTGGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTACTTAGAAGCCTACATGGGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCTAACCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAACGA
TGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MV97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831