Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QBE57_RS02265 Genome accession   NZ_CP121670
Coordinates   451354..451950 (+) Length   198 a.a.
NCBI ID   WP_014637682.1    Uniprot ID   A0AA96ZYK5
Organism   Streptococcus suis strain HBXY-SL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446354..456950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS02250 vicX 446742..447545 (+) 804 WP_024410918.1 MBL fold metallo-hydrolase Regulator
  QBE57_RS02255 vga(F) 447800..449185 (+) 1386 WP_171935704.1 ABC-F type ribosomal protection protein Vga(F) -
  QBE57_RS02260 pbp2b 449300..451345 (+) 2046 WP_216655091.1 penicillin-binding protein PBP2B -
  QBE57_RS02265 recR 451354..451950 (+) 597 WP_014637682.1 recombination mediator RecR Machinery gene
  QBE57_RS02270 - 452055..453101 (+) 1047 WP_099872406.1 D-alanine--D-alanine ligase -
  QBE57_RS02275 - 453189..453569 (+) 381 WP_105150756.1 OsmC family protein -
  QBE57_RS02280 - 453698..455059 (+) 1362 WP_012775214.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  QBE57_RS02285 - 455219..455848 (+) 630 WP_231112255.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=738547 QBE57_RS02265 WP_014637682.1 451354..451950(+) (recR) [Streptococcus suis strain HBXY-SL]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=738547 QBE57_RS02265 WP_014637682.1 451354..451950(+) (recR) [Streptococcus suis strain HBXY-SL]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTAGTCAACGAATTTGCTAAAAATCTCCTGGCGGCTAAGAGAGATT
TGACCTATTGTTCCATTTGCGGCAATTTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATACCAGCCGTGACCAGTCG
ACCATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAATACCACGGTCTTTACCATGTCTT
GCATGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACATTGCTAACTCGTCTGATGGAAA
ACGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA96ZYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495