Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FPG46_RS08740 Genome accession   NZ_AP019751
Coordinates   1738795..1739481 (-) Length   228 a.a.
NCBI ID   WP_144078973.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JRA307     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1733795..1744481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPG46_RS08720 (SAJRA307_16360) rpsT 1734709..1734960 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  FPG46_RS08725 (SAJRA307_16370) holA 1735005..1735979 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  FPG46_RS08730 (SAJRA307_16380) comEC 1736036..1738237 (-) 2202 WP_172607354.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FPG46_RS08735 (SAJRA307_16390) - 1738242..1738703 (-) 462 WP_000439693.1 ComE operon protein 2 -
  FPG46_RS08740 (SAJRA307_16400) comEA 1738795..1739481 (-) 687 WP_144078973.1 ComEA family DNA-binding protein Machinery gene
  FPG46_RS08745 (SAJRA307_16410) - 1739521..1740237 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  FPG46_RS08750 (SAJRA307_16420) rsfS 1740240..1740593 (-) 354 WP_001088022.1 ribosome silencing factor -
  FPG46_RS08755 (SAJRA307_16430) yqeK 1740594..1741178 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FPG46_RS08760 (SAJRA307_16440) nadD 1741168..1741737 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  FPG46_RS08765 (SAJRA307_16450) yhbY 1741740..1742030 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  FPG46_RS08770 (SAJRA307_16460) aroE 1742034..1742840 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  FPG46_RS08775 (SAJRA307_16470) yqeH 1742854..1743954 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25816.53 Da        Isoelectric Point: 9.6753

>NTDB_id=73821 FPG46_RS08740 WP_144078973.1 1738795..1739481(-) (comEA) [Staphylococcus aureus strain JRA307]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKTQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=73821 FPG46_RS08740 WP_144078973.1 1738795..1739481(-) (comEA) [Staphylococcus aureus strain JRA307]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAACACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

96.93

100

0.969

Multiple sequence alignment