Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   FPG46_RS00285 Genome accession   NZ_AP019751
Coordinates   58385..60013 (-) Length   542 a.a.
NCBI ID   WP_144078866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JRA307     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53385..65013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPG46_RS00250 (SAJRA307_00470) - 55182..55505 (-) 324 WP_000088091.1 JAB domain-containing protein -
  FPG46_RS00255 (SAJRA307_00480) - 55498..55704 (-) 207 WP_001077283.1 hypothetical protein -
  FPG46_RS00260 (SAJRA307_00490) - 55706..56227 (-) 522 WP_144078863.1 DUF1643 domain-containing protein -
  FPG46_RS00265 (SAJRA307_00500) - 56246..56557 (-) 312 WP_069855724.1 DUF960 family protein -
  FPG46_RS00275 (SAJRA307_00520) - 56642..56992 (-) 351 WP_144078864.1 SAUGI family uracil-DNA glycosylase inhibitor -
  FPG46_RS00280 (SAJRA307_00530) - 57563..58297 (-) 735 WP_144078865.1 glucose 1-dehydrogenase -
  FPG46_RS00285 (SAJRA307_00540) ccrB 58385..60013 (-) 1629 WP_144078866.1 cassette chromosome recombinase CcrB Machinery gene
  FPG46_RS00290 (SAJRA307_00550) ccrA 60035..61384 (-) 1350 WP_144078867.1 cassette chromosome recombinase CcrA Machinery gene
  FPG46_RS00295 (SAJRA307_00560) cch1 61563..63308 (-) 1746 WP_232049855.1 cassette chromosome replicative helicase -
  FPG46_RS00300 (SAJRA307_00570) ssb 63356..63646 (-) 291 WP_144078869.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62763.55 Da        Isoelectric Point: 9.6908

>NTDB_id=73795 FPG46_RS00285 WP_144078866.1 58385..60013(-) (ccrB) [Staphylococcus aureus strain JRA307]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCQFHHFEITDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGFVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EIHAKLDNLIKTIEDNPDLTTILKETIHKYETQLNDITNQINQLKQQQNQEKTSYNTKQLSAVLRRIFQNVESMDKSQLK
ALYLTVIDRINIRKDEHRKKQFYVTLKLNHEITKQLFHNTPIDEVRLSTSSLFLSQTLYIHI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=73795 FPG46_RS00285 WP_144078866.1 58385..60013(-) (ccrB) [Staphylococcus aureus strain JRA307]
ATGCAACAACTTAAACAAAAGCGTGTCGGTATTTATGTACGTGTATCAACAGAAATGCAAAGTACAGAAGGTTATAGTAT
TGATGGCCAAATCAATCAGATTAGAGAATACTGTCAATTTCATCATTTTGAAATCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACAAACCGACTTGCACGTAATACATCAGACTTGCTCAAAATTGTCGAGGATTTGCATAAACAGAACGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTCATGTTACAAATACTCGCAAGCTTCTCTG
AATTCGAACGCAATAACATTGTAGAAAATGTCTTCATGGGTCAAACCAGACGTGCACAAGAAGGCTATTACCAAGGCAAT
ATTCCACTTGGCTATGATAAAATTCCAGACAATAAACATGAACTTATGATAAATCAACATGAAGCGAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGTCATGGTTATCGAAAAATGGCTAACGCACTTAATCATAAAGGTTTTGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAA
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTGAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCGCCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACTAAGAAGCGAATACGTTATTATTCTTGTAGTAATTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAATCCATGCGAAACTAGACAACTTGATTAAAACAATCGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATGAAACACAACTCAATGACATTACGAATCAAATTAATCAACTGAAGCAACAACAAAATCAAGAGAAAACAT
CATATAATACGAAACAACTATCCGCTGTTTTACGTCGCATATTTCAAAACGTAGAATCCATGGATAAATCACAACTCAAA
GCGTTATATCTCACAGTCATTGACCGAATAAATATTCGTAAAGACGAACATCGTAAAAAGCAATTCTATGTCACATTAAA
ACTCAATCATGAAATCACTAAACAACTCTTCCATAATACCCCTATCGACGAAGTGCGCCTCAGCACTTCGTCTTTATTTT
TATCTCAAACACTCTATATTCATATATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.764

100

0.838

Multiple sequence alignment