Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OD347_RS01775 Genome accession   NZ_CP107079
Coordinates   329123..329560 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324123..334560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS01750 - 325140..326276 (+) 1137 WP_088613814.1 zinc-dependent alcohol dehydrogenase -
  OD347_RS01755 - 326291..326725 (+) 435 WP_013350964.1 RDD family protein -
  OD347_RS01760 - 326799..327122 (+) 324 WP_013350965.1 YckD family protein -
  OD347_RS01765 - 327227..328663 (+) 1437 WP_088612128.1 glycoside hydrolase family 1 protein -
  OD347_RS01770 nin/comJ 328704..329102 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  OD347_RS01775 nucA/comI 329123..329560 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OD347_RS01780 hxlB 329906..330463 (-) 558 WP_088612129.1 6-phospho-3-hexuloisomerase -
  OD347_RS01785 hxlA 330460..331095 (-) 636 WP_088612130.1 3-hexulose-6-phosphate synthase -
  OD347_RS01790 - 331327..331689 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=737915 OD347_RS01775 WP_013350968.1 329123..329560(-) (nucA/comI) [Bacillus velezensis strain LT-2]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=737915 OD347_RS01775 WP_013350968.1 329123..329560(-) (nucA/comI) [Bacillus velezensis strain LT-2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641