Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   OD347_RS01770 Genome accession   NZ_CP107079
Coordinates   328704..329102 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus velezensis strain LT-2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 323704..334102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS01745 - 323874..325076 (+) 1203 WP_088612127.1 GTP-binding protein -
  OD347_RS01750 - 325140..326276 (+) 1137 WP_088613814.1 zinc-dependent alcohol dehydrogenase -
  OD347_RS01755 - 326291..326725 (+) 435 WP_013350964.1 RDD family protein -
  OD347_RS01760 - 326799..327122 (+) 324 WP_013350965.1 YckD family protein -
  OD347_RS01765 - 327227..328663 (+) 1437 WP_088612128.1 glycoside hydrolase family 1 protein -
  OD347_RS01770 nin/comJ 328704..329102 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  OD347_RS01775 nucA/comI 329123..329560 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OD347_RS01780 hxlB 329906..330463 (-) 558 WP_088612129.1 6-phospho-3-hexuloisomerase -
  OD347_RS01785 hxlA 330460..331095 (-) 636 WP_088612130.1 3-hexulose-6-phosphate synthase -
  OD347_RS01790 - 331327..331689 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=737914 OD347_RS01770 WP_013350967.1 328704..329102(-) (nin/comJ) [Bacillus velezensis strain LT-2]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=737914 OD347_RS01770 WP_013350967.1 328704..329102(-) (nin/comJ) [Bacillus velezensis strain LT-2]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAGGGATATGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGACTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGACGGGATTGAAATTGAAAGCGTGATGTCAAAACGGCTTTTCTTCGATCTCCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765