Detailed information NTG0737711

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OEC00_RS08995
• Genome accession: NZ_CP107043
• Coordinates: 1818054..1818854 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KPTA-2108
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1813054..1823854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OEC00_RS08960 (OEC00_08960)	gspH	1813210..1813725 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
OEC00_RS08965 (OEC00_08965)	gspI	1813722..1814087 (+)	366	WP_048993360.1	type II secretion system minor pseudopilin GspI	-
OEC00_RS08970 (OEC00_08970)	gspJ	1814084..1814680 (+)	597	WP_064152192.1	type II secretion system minor pseudopilin GspJ	-
OEC00_RS08975 (OEC00_08975)	gspK	1814677..1815663 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
OEC00_RS08980 (OEC00_08980)	gspL	1815650..1816843 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
OEC00_RS08985 (OEC00_08985)	-	1816836..1817321 (+)	486	WP_025368434.1	type II secretion system protein M	-
OEC00_RS08990 (OEC00_08990)	-	1817311..1818057 (+)	747	WP_064152193.1	type II secretion system protein N	-
OEC00_RS08995 (OEC00_08995)	pilD	1818054..1818854 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
OEC00_RS09000 (OEC00_09000)	hrpB	1818902..1821331 (-)	2430	Protein_1775	ATP-dependent helicase HrpB	-
OEC00_RS09005 (OEC00_09005)	thpR	1821404..1821940 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
OEC00_RS09010 (OEC00_09010)	sfsA	1821940..1822656 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OEC00_RS09015 (OEC00_09015)	dksA	1822819..1823274 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=737711 OEC00_RS08995 WP_004145898.1 1818054..1818854(+) (pilD) [Klebsiella pneumoniae strain KPTA-2108]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=737711 OEC00_RS08995 WP_004145898.1 1818054..1818854(+) (pilD) [Klebsiella pneumoniae strain KPTA-2108]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425