Detailed information NTG0737700

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NQA44_RS22490
• Genome accession: NZ_CP107040
• Coordinates: 4801593..4802381 (+)
• Length: 262 a.a.
• NCBI ID: WP_032745296.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain TYL-T1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4796593..4807381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQA44_RS22455 (NQA44_22455)	gspH	4796722..4797234 (+)	513	WP_023320342.1	type II secretion system minor pseudopilin GspH	-
NQA44_RS22460 (NQA44_22460)	gspI	4797231..4797596 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
NQA44_RS22465 (NQA44_22465)	gspJ	4797593..4798189 (+)	597	WP_004107987.1	type II secretion system minor pseudopilin GspJ	-
NQA44_RS22470 (NQA44_22470)	gspK	4798186..4799166 (+)	981	WP_024273740.1	type II secretion system minor pseudopilin GspK	-
NQA44_RS22475 (NQA44_22475)	gspL	4799159..4800355 (+)	1197	WP_064351875.1	type II secretion system protein GspL	-
NQA44_RS22480 (NQA44_22480)	gspM	4800348..4800833 (+)	486	WP_004107993.1	type II secretion system protein GspM	-
NQA44_RS22485 (NQA44_22485)	-	4800823..4801581 (+)	759	WP_004110653.1	type II secretion system protein N	-
NQA44_RS22490 (NQA44_22490)	pilD	4801593..4802381 (+)	789	WP_032745296.1	A24 family peptidase	Machinery gene
NQA44_RS22495 (NQA44_22495)	hrpB	4802478..4804907 (-)	2430	WP_064351876.1	ATP-dependent helicase HrpB	-
NQA44_RS22500 (NQA44_22500)	thpR	4804980..4805516 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
NQA44_RS22505 (NQA44_22505)	sfsA	4805516..4806232 (+)	717	WP_263615968.1	DNA/RNA nuclease SfsA	-
NQA44_RS22510 (NQA44_22510)	dksA	4806397..4806852 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 262 a.a.
• Molecular weight: 28946.71 Da
• Isoelectric Point: 8.6170

>NTDB_id=737700 NQA44_RS22490 WP_032745296.1 4801593..4802381(+) (pilD) [Klebsiella oxytoca strain TYL-T1]
MALLPEFAAQFPLIWSGFLFLSGLAFGSFFNVVIYRLPLMMEYAEGVNLCFPASFCPQCRQPIAWRDNIPLLSFLWLKGR
SRCCGRPISRRYPLMELATGTLFMLVGYLIPPGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLTDLF
APLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRRSLE
QPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 789 bp

>NTDB_id=737700 NQA44_RS22490 WP_032745296.1 4801593..4802381(+) (pilD) [Klebsiella oxytoca strain TYL-T1]
ATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGAGCGGTTTTTTATTCTTGTCCGGACTGGCGTTCGG
CAGCTTTTTTAACGTCGTTATCTATCGTTTACCGCTGATGATGGAGTACGCAGAGGGAGTGAATCTCTGCTTCCCCGCAT
CGTTCTGTCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTCAAGGGGCGT
TCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCACGCTGTTTATGCTGGTCGG
GTACCTGATCCCTCCGGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCGCCATCGACG
CGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACCGATCTCTTC
GCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTTCCGTCTGCT
GACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGCAGGCGCTGC
CGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGCTCGCTCGAA
CAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (120-228)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	99.618	0.492
pilD	Vibrio campbellii strain DS40M4	44.404	100	0.469
pilD	Neisseria gonorrhoeae MS11	48.221	96.565	0.466
pilD	Acinetobacter nosocomialis M2	45.946	98.855	0.454
pilD	Acinetobacter baumannii D1279779	45.56	98.855	0.45