Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ODQ18_RS20585 Genome accession   NZ_CP107039
Coordinates   3995508..3996152 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3990508..4001152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS20555 (ODQ18_20555) - 3990934..3991302 (-) 369 WP_041850584.1 hypothetical protein -
  ODQ18_RS20560 (ODQ18_20560) - 3991481..3991543 (-) 63 Protein_3999 hypothetical protein -
  ODQ18_RS20565 (ODQ18_20565) degQ 3991765..3991905 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ODQ18_RS20570 (ODQ18_20570) - 3992089..3992949 (+) 861 WP_041850585.1 polyprenyl synthetase family protein -
  ODQ18_RS20575 (ODQ18_20575) comX 3992962..3993126 (+) 165 WP_015384519.1 competence pheromone ComX -
  ODQ18_RS20580 (ODQ18_20580) - 3993138..3995427 (+) 2290 Protein_4003 histidine kinase -
  ODQ18_RS20585 (ODQ18_20585) comA 3995508..3996152 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ODQ18_RS20590 (ODQ18_20590) yuxO 3996171..3996551 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  ODQ18_RS20595 (ODQ18_20595) mnhG 3996590..3996964 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  ODQ18_RS20600 (ODQ18_20600) mrpF 3996948..3997232 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ODQ18_RS20605 (ODQ18_20605) mrpE 3997232..3997708 (-) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  ODQ18_RS20610 (ODQ18_20610) mrpD 3997714..3999195 (-) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  ODQ18_RS20615 (ODQ18_20615) mrpC 3999188..3999529 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ODQ18_RS20620 (ODQ18_20620) mrpB 3999529..3999960 (-) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=737682 ODQ18_RS20585 WP_003220716.1 3995508..3996152(+) (comA) [Bacillus subtilis strain 11060]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=737682 ODQ18_RS20585 WP_003220716.1 3995508..3996152(+) (comA) [Bacillus subtilis strain 11060]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1