Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ODQ18_RS13685 Genome accession   NZ_CP107039
Coordinates   2648209..2648658 (+) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain 11060     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2643209..2653658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS13665 (ODQ18_13665) hxlR 2644420..2644782 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  ODQ18_RS13670 (ODQ18_13670) hxlA 2645015..2645647 (+) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  ODQ18_RS13675 (ODQ18_13675) hxlB 2645653..2646210 (+) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  ODQ18_RS13680 (ODQ18_13680) tlpC 2646320..2648041 (+) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  ODQ18_RS13685 (ODQ18_13685) nucA/comI 2648209..2648658 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  ODQ18_RS13690 (ODQ18_13690) nin/comJ 2648685..2649083 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  ODQ18_RS13695 (ODQ18_13695) bglC 2649120..2650553 (-) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  ODQ18_RS13700 (ODQ18_13700) yckD 2650707..2651039 (-) 333 WP_003246247.1 YckD family protein -
  ODQ18_RS13705 (ODQ18_13705) yckC 2651121..2651576 (-) 456 WP_024572178.1 RDD family protein -
  ODQ18_RS13710 (ODQ18_13710) - 2651596..2651793 (-) 198 WP_120363256.1 hypothetical protein -
  ODQ18_RS13715 (ODQ18_13715) yckB 2651954..2652817 (+) 864 WP_080121173.1 transporter substrate-binding domain-containing protein -
  ODQ18_RS13720 (ODQ18_13720) yckA 2652827..2653507 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=737659 ODQ18_RS13685 WP_014475770.1 2648209..2648658(+) (nucA/comI) [Bacillus subtilis strain 11060]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=737659 ODQ18_RS13685 WP_014475770.1 2648209..2648658(+) (nucA/comI) [Bacillus subtilis strain 11060]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987