Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ODQ18_RS13500 Genome accession   NZ_CP107039
Coordinates   2590835..2591983 (-) Length   382 a.a.
NCBI ID   WP_043940053.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2585835..2596983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS13470 (ODQ18_13470) yclO 2586550..2587497 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  ODQ18_RS13475 (ODQ18_13475) ceuB 2587490..2588440 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  ODQ18_RS13480 (ODQ18_13480) thrD 2588825..2590189 (+) 1365 WP_043940054.1 aspartate kinase -
  ODQ18_RS13485 (ODQ18_13485) yczN 2590343..2590456 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  ODQ18_RS13490 (ODQ18_13490) yczM 2590538..2590627 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  ODQ18_RS13495 (ODQ18_13495) phrC 2590729..2590851 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  ODQ18_RS13500 (ODQ18_13500) rapC 2590835..2591983 (-) 1149 WP_043940053.1 response regulator aspartate phosphatase RapC Regulator
  ODQ18_RS13505 (ODQ18_13505) yclK 2592147..2593568 (-) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  ODQ18_RS13510 (ODQ18_13510) yclJ 2593555..2594238 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  ODQ18_RS13515 (ODQ18_13515) yclI 2594451..2595911 (+) 1461 WP_041850694.1 ABC transporter permease -
  ODQ18_RS13520 (ODQ18_13520) yclH 2595927..2596607 (+) 681 WP_041850693.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45709.75 Da        Isoelectric Point: 4.9618

>NTDB_id=737658 ODQ18_RS13500 WP_043940053.1 2590835..2591983(-) (rapC) [Bacillus subtilis strain 11060]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVFTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=737658 ODQ18_RS13500 WP_043940053.1 2590835..2591983(-) (rapC) [Bacillus subtilis strain 11060]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTTCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.476

100

0.995
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568