Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ODQ18_RS03500 Genome accession   NZ_CP107039
Coordinates   631261..631596 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 11060     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 626261..636596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS03450 (ODQ18_03450) comGC 626280..626576 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ODQ18_RS03455 (ODQ18_03455) comGD 626566..626997 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ODQ18_RS03460 (ODQ18_03460) comGE 626981..627328 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ODQ18_RS03465 (ODQ18_03465) comGF 627354..627737 (+) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  ODQ18_RS03470 (ODQ18_03470) comGG 627738..628112 (+) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ODQ18_RS03475 (ODQ18_03475) spoIITA 628183..628362 (+) 180 WP_003230176.1 YqzE family protein -
  ODQ18_RS03480 (ODQ18_03480) yqzG 628404..628730 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  ODQ18_RS03485 (ODQ18_03485) tapA 629002..629763 (+) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ODQ18_RS03490 (ODQ18_03490) sipW 629747..630319 (+) 573 WP_003246088.1 signal peptidase I SipW -
  ODQ18_RS03495 (ODQ18_03495) tasA 630383..631168 (+) 786 WP_015251717.1 biofilm matrix protein TasA -
  ODQ18_RS03500 (ODQ18_03500) sinR 631261..631596 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ODQ18_RS03505 (ODQ18_03505) sinI 631630..631803 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  ODQ18_RS03510 (ODQ18_03510) yqhG 631986..632780 (-) 795 WP_003230200.1 YqhG family protein -
  ODQ18_RS03515 (ODQ18_03515) hepAA 632801..634474 (-) 1674 WP_041850014.1 DEAD/DEAH box helicase -
  ODQ18_RS03520 (ODQ18_03520) gcvT 634915..636003 (+) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=737625 ODQ18_RS03500 WP_003226345.1 631261..631596(-) (sinR) [Bacillus subtilis strain 11060]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=737625 ODQ18_RS03500 WP_003226345.1 631261..631596(-) (sinR) [Bacillus subtilis strain 11060]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1