Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACRAD_RS12655 Genome accession   NZ_AP019740
Coordinates   2680233..2680868 (+) Length   211 a.a.
NCBI ID   WP_005018309.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2675233..2685868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS12645 (ACRAD_24690) - 2677368..2678177 (-) 810 WP_005024414.1 NAD-dependent epimerase/dehydratase family protein -
  ACRAD_RS12650 (ACRAD_24700) recG 2678201..2680246 (+) 2046 WP_005024412.1 ATP-dependent DNA helicase RecG -
  ACRAD_RS12655 (ACRAD_24710) comF 2680233..2680868 (+) 636 WP_005018309.1 ComF family protein Machinery gene
  ACRAD_RS12660 (ACRAD_24720) - 2680865..2681266 (-) 402 WP_005024410.1 NUDIX domain-containing protein -
  ACRAD_RS12665 (ACRAD_24730) - 2681276..2681857 (-) 582 WP_005404596.1 TIGR00730 family Rossman fold protein -
  ACRAD_RS12670 (ACRAD_24740) - 2682022..2683035 (+) 1014 WP_005024408.1 magnesium and cobalt transport protein CorA -
  ACRAD_RS12675 (ACRAD_24750) - 2683070..2683360 (-) 291 WP_005024406.1 lipid asymmetry maintenance protein MlaB -
  ACRAD_RS12680 (ACRAD_24760) - 2683384..2684022 (-) 639 WP_005024404.1 phospholipid-binding protein MlaC -
  ACRAD_RS12685 (ACRAD_24770) - 2684040..2684702 (-) 663 WP_005024401.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACRAD_RS12690 (ACRAD_24780) mlaE 2684702..2685478 (-) 777 WP_005024399.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24264.38 Da        Isoelectric Point: 8.8071

>NTDB_id=73758 ACRAD_RS12655 WP_005018309.1 2680233..2680868(+) (comF) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELNIHVACGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTQLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=73758 ACRAD_RS12655 WP_005018309.1 2680233..2680868(+) (comF) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGCCTATGTTTAACCCATCCTCTTTACTCAGACCTATCTCACGGCTGCTACCCTGCCCGCTTTGTAGCAGCAGTTTACA
AATGCAGCATGGAGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAAACA
TTCATGTTGCCTGTGGCTATCAGTATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGCTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCAGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.872

100

0.569
  comF Acinetobacter baumannii D1279779

56.872

100

0.569

Multiple sequence alignment