Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACRAD_RS12345 Genome accession   NZ_AP019740
Coordinates   2630814..2631695 (-) Length   293 a.a.
NCBI ID   WP_010699894.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625814..2636695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS12325 (ACRAD_24100) miaB 2627245..2628702 (+) 1458 WP_005018411.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACRAD_RS12330 (ACRAD_24110) - 2628741..2629838 (+) 1098 WP_005018410.1 PhoH family protein -
  ACRAD_RS12335 (ACRAD_24120) ybeY 2629847..2630326 (+) 480 WP_005018409.1 rRNA maturation RNase YbeY -
  ACRAD_RS12340 (ACRAD_24130) - 2630424..2630798 (+) 375 WP_392388350.1 hypothetical protein -
  ACRAD_RS12345 (ACRAD_24140) tonB2 2630814..2631695 (-) 882 WP_010699894.1 energy transducer TonB Machinery gene
  ACRAD_RS12350 (ACRAD_24150) - 2631939..2632619 (+) 681 WP_005024481.1 hypothetical protein -
  ACRAD_RS12355 (ACRAD_24160) - 2632787..2633500 (+) 714 WP_005024479.1 DUF3108 domain-containing protein -
  ACRAD_RS12360 (ACRAD_24170) - 2633593..2634168 (+) 576 WP_005024477.1 xanthine phosphoribosyltransferase -
  ACRAD_RS12365 (ACRAD_24180) wrbA 2634207..2634800 (-) 594 WP_005024475.1 NAD(P)H:quinone oxidoreductase -
  ACRAD_RS12370 (ACRAD_24190) - 2634913..2636157 (+) 1245 WP_005024473.1 YhjD/YihY/BrkB family envelope integrity protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32951.51 Da        Isoelectric Point: 8.3816

>NTDB_id=73756 ACRAD_RS12345 WP_010699894.1 2630814..2631695(-) (tonB2) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MLKKIILPGGIGLAWWQDPIFMGALLLAVILHSAILTLHFAMPDPEAAASKEIAVSIRPSSEQVKDADYLAQADQQGSGR
FREAHRISSQLPASSQQQSAGEQQQETLQQMHQQPQIQFEDKVLMTIMSWRKEAEQNQRKKALEELQSQFQAKAATAASL
EAQYLQRQQDFSRQQRIKTVDGIQAKQDAAAAYLDKFREKVELYGNRYYPQQAKAERLTGEVQLMVILNAQGGIRAIRLL
ESSGHTILDEAAKASVRKGAPFGRFDAGMKDISELRIVRTWRFDPAEAEFEVK

Nucleotide


Download         Length: 882 bp        

>NTDB_id=73756 ACRAD_RS12345 WP_010699894.1 2630814..2631695(-) (tonB2) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGTTGAAAAAAATAATTTTACCTGGTGGGATAGGTCTGGCTTGGTGGCAGGATCCGATTTTTATGGGTGCTCTGTTGCT
GGCTGTCATTTTACATTCGGCGATTTTAACTCTGCATTTTGCAATGCCAGATCCAGAGGCTGCTGCCAGTAAGGAAATCG
CTGTCAGCATTCGTCCGAGTTCTGAGCAGGTCAAAGATGCCGACTATCTGGCACAGGCAGACCAGCAGGGTTCAGGCCGC
TTTCGAGAGGCTCACCGTATCTCAAGCCAGCTACCGGCCAGTTCACAACAACAGAGTGCGGGTGAGCAGCAGCAGGAGAC
TTTACAGCAGATGCACCAACAGCCTCAAATACAGTTTGAAGACAAAGTCCTGATGACAATCATGAGCTGGCGCAAAGAAG
CGGAGCAAAACCAGCGTAAAAAGGCTTTAGAAGAATTACAGAGCCAGTTTCAGGCTAAGGCAGCAACGGCTGCCAGTCTG
GAAGCCCAGTATTTACAGCGTCAGCAGGATTTCAGCCGTCAGCAGCGTATCAAAACGGTGGATGGAATACAGGCCAAGCA
GGATGCAGCAGCTGCCTATCTGGACAAGTTCCGTGAAAAAGTTGAACTCTATGGTAACCGCTATTATCCGCAGCAGGCTA
AGGCTGAGCGCCTAACAGGAGAAGTGCAGCTTATGGTCATCCTGAATGCTCAAGGCGGGATACGTGCAATCCGGTTATTG
GAAAGTTCAGGACATACCATTCTAGATGAGGCAGCTAAGGCTTCTGTACGTAAAGGTGCGCCATTTGGGCGATTTGATGC
AGGTATGAAAGATATTTCTGAACTACGCATTGTACGGACGTGGCGATTCGACCCGGCCGAGGCTGAATTCGAAGTAAAAT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.014

100

0.72

Multiple sequence alignment