Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ODS73_RS08300 Genome accession   NZ_CP107038
Coordinates   1602823..1604055 (-) Length   410 a.a.
NCBI ID   WP_000106347.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597823..1609055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS08275 (ODS73_08265) whiA 1599012..1599923 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  ODS73_RS08280 (ODS73_08270) - 1599920..1600897 (-) 978 WP_001231086.1 YvcK family protein -
  ODS73_RS08285 (ODS73_08275) rapZ 1600894..1601784 (-) 891 WP_000163033.1 RNase adapter RapZ -
  ODS73_RS08290 (ODS73_08280) - 1601836..1602216 (-) 381 WP_001140412.1 RidA family protein -
  ODS73_RS08295 (ODS73_08285) yihA 1602227..1602814 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ODS73_RS08300 (ODS73_08290) clpX 1602823..1604055 (-) 1233 WP_000106347.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ODS73_RS08305 (ODS73_08295) - 1604257..1604763 (-) 507 WP_000162494.1 dihydrofolate reductase -
  ODS73_RS08310 (ODS73_08300) - 1604893..1605411 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  ODS73_RS08315 (ODS73_08305) lytC 1605908..1607413 (-) 1506 WP_075575672.1 choline binding-anchored murein hydrolase LytC -
  ODS73_RS08320 (ODS73_08310) tpiA 1607451..1608209 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  ODS73_RS08325 (ODS73_08315) - 1608308..1608985 (-) 678 WP_000221584.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45797.41 Da        Isoelectric Point: 4.5109

>NTDB_id=737558 ODS73_RS08300 WP_000106347.1 1602823..1604055(-) (clpX) [Streptococcus pneumoniae strain BM6001]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=737558 ODS73_RS08300 WP_000106347.1 1602823..1604055(-) (clpX) [Streptococcus pneumoniae strain BM6001]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTTCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGAAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563