Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ODS73_RS06415 Genome accession   NZ_CP107038
Coordinates   1252613..1253422 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain BM6001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247613..1258422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS06395 (ODS73_06390) - 1249955..1250941 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  ODS73_RS06400 (ODS73_06395) - 1251204..1251977 (-) 774 WP_044811410.1 potassium channel family protein -
  ODS73_RS06405 (ODS73_06400) - 1252024..1252278 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ODS73_RS06410 (ODS73_06405) relB 1252280..1252522 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  ODS73_RS06415 (ODS73_06410) vicX 1252613..1253422 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  ODS73_RS06420 (ODS73_06415) micB 1253424..1254773 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ODS73_RS06425 (ODS73_06420) micA 1254766..1255470 (-) 705 WP_000722076.1 response regulator YycF Regulator
  ODS73_RS06430 (ODS73_06425) mutY 1255525..1256700 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=737549 ODS73_RS06415 WP_001289493.1 1252613..1253422(-) (vicX) [Streptococcus pneumoniae strain BM6001]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=737549 ODS73_RS06415 WP_001289493.1 1252613..1253422(-) (vicX) [Streptococcus pneumoniae strain BM6001]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773