NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	OCT48_RS08525	Genome accession	NZ_CP107008
Coordinates	1796792..1797643 (-)	Length	283 a.a.
NCBI ID	WP_263592266.1	Uniprot ID	-
Organism	Halomonas sp. M4R1S46
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1791792..1802643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCT48_RS08495 (OCT48_08495)	rpsA	1791884..1793560 (+)	1677	WP_263592260.1	30S ribosomal protein S1	-
OCT48_RS08500 (OCT48_08500)	-	1793868..1794245 (+)	378	WP_263592261.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
OCT48_RS08505 (OCT48_08505)	-	1794719..1794988 (+)	270	WP_263592262.1	hypothetical protein	-
OCT48_RS08510 (OCT48_08510)	-	1794998..1795867 (-)	870	WP_263592263.1	DNA replication terminus site-binding protein	-
OCT48_RS08515 (OCT48_08515)	yacG	1795873..1796106 (-)	234	WP_263592264.1	DNA gyrase inhibitor YacG	-
OCT48_RS08520 (OCT48_08520)	coaE	1796161..1796790 (-)	630	WP_263592265.1	dephospho-CoA kinase	-
OCT48_RS08525 (OCT48_08525)	pilD	1796792..1797643 (-)	852	WP_263592266.1	prepilin peptidase	Machinery gene
OCT48_RS08530 (OCT48_08530)	nagZ	1797805..1798818 (+)	1014	WP_263592267.1	beta-N-acetylhexosaminidase	-
OCT48_RS08535 (OCT48_08535)	-	1798852..1799430 (+)	579	WP_183384666.1	hypoxanthine-guanine phosphoribosyltransferase	-
OCT48_RS08540 (OCT48_08540)	-	1799490..1801205 (-)	1716	WP_263592268.1	AMP-binding protein	-
OCT48_RS08545 (OCT48_08545)	-	1801276..1801719 (-)	444	WP_263592269.1	MerR family transcriptional regulator	-

Sequence

Protein

Download Length: 283 a.a. Molecular weight: 30509.74 Da Isoelectric Point: 6.8633

                                >NTDB_id=737319 OCT48_RS08525 WP_263592266.1 1796792..1797643(-) (pilD) [Halomonas sp. M4R1S46]

MLVDLPPSLLWPLAAVFGLCLGSFLNVVITRLPVMLMREWRAEARDALEFEAESSAPFNLVRPPSLCPRCEAPIAWHDNI

PLIGWLKRRGRCASCQGRISAQYPLVELAGGLLTLAVVGLYGPSLEGLFILGACLALLAMAVIDLRTQLLPDILTLPLLW

AGLLYQLVFQPPALAAAVIGAMAGYLALWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQLLPLVLILAAGAGALVGI

LAQLALPRLRGAPMPFGPWLAVAGWIALLVGEPLMATYLDLVF

Nucleotide

Download Length: 852 bp

                                >NTDB_id=737319 OCT48_RS08525 WP_263592266.1 1796792..1797643(-) (pilD) [Halomonas sp. M4R1S46]

TTGCTAGTCGACCTCCCCCCTTCCCTGCTCTGGCCGCTGGCTGCGGTGTTCGGCCTGTGCCTTGGCAGCTTCCTCAATGT

CGTGATCACCCGGCTGCCGGTGATGCTGATGCGTGAATGGCGGGCCGAGGCGCGGGACGCCCTGGAGTTCGAGGCCGAAT

CGTCGGCGCCGTTCAACCTGGTCCGCCCGCCCTCGCTGTGCCCGCGCTGCGAGGCTCCCATCGCCTGGCACGACAACATC

CCGCTGATCGGCTGGCTCAAGCGCCGTGGTCGCTGTGCCAGCTGCCAGGGACGGATCAGCGCCCAGTACCCGCTGGTGGA

GCTGGCCGGCGGCCTGCTGACCCTGGCGGTGGTGGGACTCTACGGCCCCAGCCTGGAGGGCCTGTTCATCCTGGGCGCCT

GCCTGGCCCTGCTGGCCATGGCCGTGATCGACCTGCGTACCCAGCTGCTCCCGGACATCCTCACCCTGCCGTTGCTCTGG

GCGGGCCTGCTCTATCAGCTGGTCTTCCAGCCGCCGGCGCTGGCGGCGGCGGTGATCGGTGCCATGGCCGGCTACCTCGC

CCTGTGGAGCTTCTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGGATGGGCTACGGCGACTTCAAGTTGCTCGCCG

CCCTGGGCGCCTGGCTGGGCTGGCAGCTCCTGCCCCTGGTACTGATCCTCGCCGCGGGCGCCGGGGCCCTGGTCGGCATC

CTGGCCCAGCTGGCCCTGCCGCGGCTGCGGGGGGCGCCGATGCCCTTCGGTCCCTGGCTGGCCGTGGCCGGCTGGATTGC

CCTGCTGGTCGGCGAGCCCCTGATGGCCACCTACCTTGACCTGGTGTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-240)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	50.549	96.466	0.488
pilD	Vibrio campbellii strain DS40M4	45.878	98.587	0.452
pilD	Acinetobacter nosocomialis M2	46.642	94.7	0.442
pilD	Acinetobacter baumannii D1279779	46.269	94.7	0.438
pilD	Neisseria gonorrhoeae MS11	45.66	93.64	0.428

Detailed information NTG0737319