Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKQ68_RS23300 Genome accession   NZ_CP107006
Coordinates   5741970..5742437 (-) Length   155 a.a.
NCBI ID   WP_244836681.1    Uniprot ID   -
Organism   Chitinophaga horti strain R8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5736970..5747437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKQ68_RS23275 (MKQ68_23275) - 5737857..5739209 (-) 1353 WP_264281158.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  MKQ68_RS23280 (MKQ68_23280) - 5739304..5739882 (-) 579 WP_264281159.1 DUF3109 family protein -
  MKQ68_RS23285 (MKQ68_23285) gldD 5739892..5740488 (-) 597 WP_264281160.1 gliding motility lipoprotein GldD -
  MKQ68_RS23290 (MKQ68_23290) - 5740495..5741436 (-) 942 WP_349773830.1 transporter associated domain-containing protein -
  MKQ68_RS23295 (MKQ68_23295) - 5741370..5741840 (-) 471 WP_264281161.1 DUF21 domain-containing protein -
  MKQ68_RS23300 (MKQ68_23300) ssb 5741970..5742437 (-) 468 WP_244836681.1 single-stranded DNA-binding protein Machinery gene
  MKQ68_RS23305 (MKQ68_23305) mutY 5742808..5743809 (-) 1002 WP_264281162.1 A/G-specific adenine glycosylase -
  MKQ68_RS23310 (MKQ68_23310) - 5744103..5744390 (+) 288 WP_029464490.1 HU family DNA-binding protein -
  MKQ68_RS23315 (MKQ68_23315) - 5744415..5745260 (+) 846 WP_264281163.1 tetratricopeptide repeat protein -
  MKQ68_RS25845 (MKQ68_23320) - 5745292..5745387 (+) 96 WP_224118025.1 AURKAIP1/COX24 domain-containing protein -
  MKQ68_RS23325 (MKQ68_23325) - 5745703..5747253 (+) 1551 WP_264281164.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17106.31 Da        Isoelectric Point: 6.4945

>NTDB_id=737289 MKQ68_RS23300 WP_244836681.1 5741970..5742437(-) (ssb) [Chitinophaga horti strain R8]
MRGVNKVILIGNLGRDPDVQFLEGNIAVAKFSLATTETFKDRAGKLISQTEWHTVVLWRGLAELAQKYLHKGSLVYIEGR
LRTRSWEDKEGNKKFATEVVGDNLVMLDKRMDVNNGEHAIHHHQGGSSGGTQSGGEGYPGLEIPPINEPADDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=737289 MKQ68_RS23300 WP_244836681.1 5741970..5742437(-) (ssb) [Chitinophaga horti strain R8]
ATGAGAGGTGTTAATAAAGTGATTCTGATTGGCAATCTAGGCAGAGACCCCGACGTGCAATTCCTCGAAGGCAACATTGC
CGTAGCCAAGTTCTCTCTCGCTACTACAGAAACATTTAAGGACAGGGCTGGAAAACTGATATCCCAAACTGAATGGCATA
CGGTTGTTTTATGGAGAGGCCTGGCCGAACTGGCCCAGAAGTACCTCCATAAAGGAAGTCTCGTTTATATAGAAGGCCGC
CTGCGCACCCGTAGCTGGGAAGACAAGGAAGGCAATAAGAAATTTGCCACCGAAGTGGTGGGCGATAATCTTGTTATGCT
CGACAAACGCATGGATGTGAACAATGGCGAACATGCCATTCACCACCACCAGGGCGGCTCTTCAGGGGGTACACAATCCG
GCGGCGAAGGCTATCCGGGCCTGGAAATACCGCCGATCAACGAACCGGCAGACGACCTTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.373

100

0.484
  ssb Glaesserella parasuis strain SC1401

39.444

100

0.458