Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QA712_RS01870 Genome accession   NZ_CP121539
Coordinates   259775..260845 (+) Length   356 a.a.
NCBI ID   WP_372757433.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 254775..265845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS01850 (QA712_01830) - 255570..255962 (+) 393 WP_372757427.1 hypothetical protein -
  QA712_RS01855 (QA712_01835) recA 255977..257002 (+) 1026 WP_372757429.1 recombinase RecA -
  QA712_RS01860 (QA712_01840) xerS 257866..258921 (+) 1056 WP_372757431.1 tyrosine recombinase XerS Machinery gene
  QA712_RS01865 (QA712_01845) - 259005..259292 (+) 288 WP_033899768.1 hypothetical protein -
  QA712_RS01870 (QA712_01850) xerS 259775..260845 (+) 1071 WP_372757433.1 tyrosine recombinase XerS Machinery gene
  QA712_RS01875 (QA712_01855) trmFO 260892..262235 (-) 1344 WP_311803373.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QA712_RS01880 (QA712_01860) topA 262307..264439 (-) 2133 WP_003131148.1 type I DNA topoisomerase -
  QA712_RS01885 (QA712_01865) dprA 264701..265549 (-) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41409.26 Da        Isoelectric Point: 9.6756

>NTDB_id=737270 QA712_RS01870 WP_372757433.1 259775..260845(+) (xerS) [Lactococcus lactis strain MA5]
MKREQLIQNIEKLKHIMPSFVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLTVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNIMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=737270 QA712_RS01870 WP_372757433.1 259775..260845(+) (xerS) [Lactococcus lactis strain MA5]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTTTGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCACTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTCATCCTCTATCTTAGGGAGAGACCTCGTTTAAATACGCGTTCTACCCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGCAATATTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATACGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACCACAGCGAA
AGATACGGCATTTTTTGTGACGCTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTACGAGTGACCCCTCACAAACTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAAGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

75.843

100

0.758